View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13855_low_6 (Length: 264)

Name: NF13855_low_6
Description: NF13855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13855_low_6
NF13855_low_6
[»] chr5 (2 HSPs)
chr5 (1-248)||(41558049-41558296)
chr5 (42-122)||(683371-683451)
[»] chr6 (1 HSPs)
chr6 (145-192)||(1315079-1315126)
[»] chr2 (2 HSPs)
chr2 (147-238)||(987385-987476)
chr2 (145-189)||(9394585-9394629)
[»] chr8 (1 HSPs)
chr8 (1-78)||(28485612-28485689)
[»] chr3 (2 HSPs)
chr3 (41-122)||(28596860-28596941)
chr3 (145-197)||(31888776-31888828)
[»] chr1 (1 HSPs)
chr1 (145-190)||(3332564-3332609)
[»] chr4 (1 HSPs)
chr4 (145-185)||(1074172-1074212)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41558296 - 41558049
Alignment:
Q  1 gtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558296 gtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctca 41558197  T
Q  101 agatgatccctatgtttaaccattaaatattacttagatccctatatcaatttggtccttatatttaaccacttaccaccaatttagtccctagcatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558196 agatgatccctatgtttaaccattaaatattacttagatccctatatcaatttggtccttatatttaaccacttaccaccaatttagtccctagcatgct 41558097  T
Q  201 ttcagaagttctaacagaagtaaaatttgacagagtcacacacctttt 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558096 ttcagaagttctaacagaagtaaaatttgacagagtcacacacctttt 41558049  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 683371 - 683451
Alignment:
Q  42 aaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctatgtttaacca 122  Q
    |||||||||||||| ||||||| |||||| ||||||| | | || |||||||| | ||||| |||||| ||| ||||||||    
T  683371 aaataggtccctgaaattatgactatttcaaaaaggtctctgactctattaaattgtcaagttgatccttatatttaacca 683451  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 1315079 - 1315126
Alignment:
Q  145 tatcaatttggtccttatatttaaccacttaccaccaatttagtccct 192  Q
    |||||||||| ||||||||||||||||||||  | |||||||||||||    
T  1315079 tatcaatttgatccttatatttaaccacttaatatcaatttagtccct 1315126  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 987476 - 987385
Alignment:
Q  147 tcaatttggtccttatatttaaccacttaccaccaatttagtccctagcatgctttcagaagttctaacagaagtaaaatttgacagagtca 238  Q
    |||||||||||| ||| |||||||||||| ||  |||||||||| || |||| |||||||||  |||| |  ||| |||||||||| |||||    
T  987476 tcaatttggtccctatctttaaccacttatcattaatttagtccttaacatgttttcagaaggactaatatgagtgaaatttgacaaagtca 987385  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 9394629 - 9394585
Alignment:
Q  145 tatcaatttggtccttatatttaaccacttaccaccaatttagtc 189  Q
    ||||||||||| || ||||||||||||||||| | ||||||||||    
T  9394629 tatcaatttgggccatatatttaaccacttactatcaatttagtc 9394585  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28485689 - 28485612
Alignment:
Q  1 gtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatttcgaaaaggt 78  Q
    ||||||||| |||||||||||| |||| |||   ||  |||||||| |||||||| | |||||||||||| |||||||    
T  28485689 gtaaactaccaaattagtccctgactttgtagggcgcattcaaataagtccctgaaagtatgaatatttcaaaaaggt 28485612  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 28596941 - 28596860
Alignment:
Q  41 caaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctatgtttaacca 122  Q
    ||||||||||||||| || |||||||||| |||||||||    || |||||||||| ||||| || ||||||| ||| ||||    
T  28596941 caaataggtccctgaaataatgaatattttgaaaaggttccggactctattaaactgtcaagttggtccctatatttcacca 28596860  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 31888828 - 31888776
Alignment:
Q  145 tatcaatttggtccttatatttaaccacttaccaccaatttagtccctagcat 197  Q
    |||||| || ||||||||||||||| | |||||| ||||| ||||||||||||    
T  31888828 tatcaaattagtccttatatttaacaagttaccatcaattcagtccctagcat 31888776  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 3332609 - 3332564
Alignment:
Q  145 tatcaatttggtccttatatttaaccacttaccaccaatttagtcc 190  Q
    |||||||||||||  ||||||||||||||||| | |||||||||||    
T  3332609 tatcaatttggtctgtatatttaaccacttactatcaatttagtcc 3332564  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 1074212 - 1074172
Alignment:
Q  145 tatcaatttggtccttatatttaaccacttaccaccaattt 185  Q
    ||||||||||||||||||||||| |||||||| | ||||||    
T  1074212 tatcaatttggtccttatatttagccacttactatcaattt 1074172  T

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