View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_high_15 (Length: 326)
Name: NF13856_high_15
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 31437774 - 31437484
Alignment:
| Q |
17 |
agataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaacttgaaaagacttatataaacttattaagatgctcttaga |
116 |
Q |
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| T |
31437774 |
agataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaacttgaaaagacttatataaacttattaagatgctcttaga |
31437675 |
T |
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| Q |
117 |
caagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagccgttctcaatatatatactactactactatatagaagatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31437674 |
caagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagccgttctcaatatatatactacta------tatagaagatt |
31437581 |
T |
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| Q |
217 |
catgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataatatgctgttttaatttgtttgttattgtggttatgttc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437580 |
catgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataatatgctgttttaatttgtttgttattgtggttatgttc |
31437484 |
T |
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