View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_high_16 (Length: 308)
Name: NF13856_high_16
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 1514550 - 1514670
Alignment:
| Q |
162 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag |
261 |
Q |
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| T |
1514550 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag |
1514649 |
T |
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| Q |
262 |
caaatgaggatacagtgagca |
282 |
Q |
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| T |
1514650 |
caaaggaggatacagtgagca |
1514670 |
T |
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Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1514388 - 1514484
Alignment:
| Q |
1 |
gtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaagaaagaacc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1514388 |
gtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaagaaaaaacc |
1514484 |
T |
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