View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_high_19 (Length: 247)
Name: NF13856_high_19
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2549127 - 2548896
Alignment:
| Q |
1 |
ttggcatatgaaaacaggagaagcctatgaagatgtggatatttgattgtaggtatcctagccatcaagctttccaattaggacttgcagctcttattct |
100 |
Q |
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| T |
2549127 |
ttggcatatgaaaacaggagaagcctatgaagatgtggatatttgattgtaggtatcctagccatcaagctttccaattaggacttgcagctcttattct |
2549028 |
T |
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| Q |
101 |
cttgtctcttgctcatataattgctaacttgcttggaggctgcgtttgtgtttggtctaaagaccaatacagatcagccacagccaatagacaattatct |
200 |
Q |
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| T |
2549027 |
cttgtctcttgctcatataattgctaacttgcttggaggctgcgtttgtgtttggtctaaagaccaatacagatcagccacagccaataaacaattatct |
2548928 |
T |
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| Q |
201 |
atggcttttctcattttctcttggtaagttgt |
232 |
Q |
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| T |
2548927 |
atggcttttctcattttctcttggtaagttgt |
2548896 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 36574004 - 36574078
Alignment:
| Q |
155 |
gtctaaagaccaatacagatcagccacagccaatagacaattatctatggcttttctcattttctcttggtaagt |
229 |
Q |
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||||||||| |||||| | ||||||| |||||||||||||| | |||||||| ||||||||||| |||||||| |
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| T |
36574004 |
gtctaaagaagaatacaaaagagccacatccaatagacaattagcaatggctttcctcattttctcatggtaagt |
36574078 |
T |
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