View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_high_2 (Length: 622)
Name: NF13856_high_2
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 232 - 604
Target Start/End: Complemental strand, 36681292 - 36680920
Alignment:
| Q |
232 |
gtaccttataaattgaactatttagccttagaattaatccatcatccaataacgatctatcctagtaagcaataaacatgaagccctcaaatattctcgt |
331 |
Q |
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| T |
36681292 |
gtaccttataaattgaactatttagccttcgaattaatccatcatccaataacgatctatcctagtaagcaataaacatgaagccctcaaatattctcgt |
36681193 |
T |
|
| Q |
332 |
aatcttaaccattttctctatgtgctgtttcctttgcttggcacacaacgcccctcaagactacctagacgtgcacaacaaggctcgtgccgaggttggt |
431 |
Q |
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| T |
36681192 |
aatcttaaccattttctctatgtgctgtttcctttgcttggcacacaacgcccctcaagactacctagacgtgcacaacaaggctcgtgccgaggttggt |
36681093 |
T |
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| Q |
432 |
gttggcccactcgtgtggaacgaaacccttgcttcctatgccatgaactatgctaaatcgaagcacgaaacctgcgaaatggtgcactcccaagggcctt |
531 |
Q |
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| T |
36681092 |
gttggcccactcgtgtggaacgaaacccttgcctcctatgccatgaactatgctaaatcgaagcacgaaacctgcgaaatggtgcactcccaagggcctt |
36680993 |
T |
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| Q |
532 |
atggcgagaaccttgcggagggttctgacccccaaatgaatgccgctgctgctgtgaaattatgggtggatga |
604 |
Q |
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| T |
36680992 |
atggcgagaaccttgcggagggttctgacccccaaatgaatgccgctgatgctgtgaaattatgggtggatga |
36680920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 36681523 - 36681345
Alignment:
| Q |
1 |
atggtacaagcgacatacaattttcaactgatttttgtcgtcaaatttagataatgaaacaatctttctcactnnnnnnngatcacatattttgcattct |
100 |
Q |
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| T |
36681523 |
atggtacgagcgacatacaattttcaactgatttttgtcgtcaaatttagataatgaaacaatctttctcactaaaaaaagatcacatactttgcattct |
36681424 |
T |
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| Q |
101 |
ctatttttgtgatttcnnnnnnnagtgaatctagactctagagaatgagagaaagaagaggccacaccactagattggt |
179 |
Q |
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| T |
36681423 |
ctatttttgtgatttctttttttagtgaatctagactctagagaatgagagaaagaagaggccacaccactagattggt |
36681345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 547
Target Start/End: Complemental strand, 36690883 - 36690752
Alignment:
| Q |
416 |
tcgtgccgaggttggtgttggcccactcgtgtggaacgaaacccttgcttcctatgccatgaactatgctaaatcgaagcacgaaacctgcgaaatggtg |
515 |
Q |
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| T |
36690883 |
tcgtgccgaggttggtgttcctccactcaagtggaatgacaccattgcagcctatgccaggaactttgttaaaacgaagattgatacctgcgtaatggag |
36690784 |
T |
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| Q |
516 |
cactcccaagggccttatggcgagaaccttgc |
547 |
Q |
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| T |
36690783 |
ccctccggtgggccttatggcgagaactttgc |
36690752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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