View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13856_high_20 (Length: 246)
Name: NF13856_high_20
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_20 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 16466748 - 16466502
Alignment:
| Q |
9 |
agcatagggggtgattggcttcaagcccaaaagaaaaacacataaaataaagggaagcatcaatgaggttgctgctagctttgtnnnnnnnnnnn----- |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16466748 |
agcattgggggtgattggcttcaagcccaaaagaaaaacacataaaataaagggaagcatcaatgaggttgctgctagctttgtaaaaaaaaataaaaaa |
16466649 |
T |
|
| Q |
104 |
ttgctggaaggttgacaccaaaatttctggaagcagctggtaagagtaca----gtaaaaggcatacgcattaagaaacagatttgagagaaaagagata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16466648 |
ttgctggaaggttgacaccaaaatttctggaagcagctggtaagagtacatacagtaaaaggcatacgcattaagaaacagatttgagagaaaagagata |
16466549 |
T |
|
| Q |
200 |
gatgaaggtgagggccaaaaaggcaaaaggtgagttatctaactgtc |
246 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
16466548 |
gatgaaggtgagggcaaaaaaggaaaaaggtgagttatctaactgtc |
16466502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 26426587 - 26426649
Alignment:
| Q |
115 |
ttgacaccaaaatttctggaagcagctggtaagagtacagtaaaaggcatacgcattaagaaa |
177 |
Q |
| |
|
||||||||| |||||||| || |||||||||||| ||| ||||||| ||| ||||||||||| |
|
|
| T |
26426587 |
ttgacaccacaatttctgaaatcagctggtaagaaaacaataaaaggaataggcattaagaaa |
26426649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University