View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13856_high_24 (Length: 230)
Name: NF13856_high_24
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 39784395 - 39784171
Alignment:
| Q |
1 |
tgtttataaatctacttacaaatcacatcaaatttttatctacatttactctacgtgttccattatattcttattctct----cttgtctctagctactt |
96 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39784395 |
tgtttataaatctatttacaaatcacatcaaatttttatctacatttactctacgtgttccattatattcttattctctctgccttgtctctagctactt |
39784296 |
T |
|
| Q |
97 |
ctcaacagttattatcaccaaac--------tgataatatgtattagggtactccaccaaataataacaataattagaagaaggataaacggttctagag |
188 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39784295 |
ctcaaccgttgttatcaccaaacttcacttttgataatatgtattagggtactccaccaaataataacaataattagaagaagggtaaacggttctagag |
39784196 |
T |
|
| Q |
189 |
acatattaaatgtgacgagtattct |
213 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
39784195 |
acgtattaaatgtgacgagtattct |
39784171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University