View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13856_high_26 (Length: 225)
Name: NF13856_high_26
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 38936097 - 38935878
Alignment:
| Q |
2 |
tttggaataagtagcagcctgaggtatggttatgtaaagcaatccatccttaacctcagccttaatattctcaaactgcacattctctggcaaagcaatt |
101 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936097 |
tttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaatattctcaaactgcacattctctggcaaagcaatt |
38935998 |
T |
|
| Q |
102 |
ctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgctttctcagctttcacaaccagcatcttttcttcca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935997 |
ctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgctttctcagctttcacaaccagcatcttttcttcca |
38935898 |
T |
|
| Q |
202 |
cccaaaccttaacctcctct |
221 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
38935897 |
cccaaaccttaacatcctct |
38935878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University