View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_high_6 (Length: 479)
Name: NF13856_high_6
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 211 - 454
Target Start/End: Complemental strand, 43201615 - 43201372
Alignment:
| Q |
211 |
aattagctagtagtcaatatttatagttcagaaaatcctcgtacaagaaaaacaattatctttttcttctaaatattactctttaatttctcacacgctt |
310 |
Q |
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| T |
43201615 |
aattagctagtagtcaatatttatagttcagaaaatcctcgtacaagaaaaacaattatctttttcttctaaataccactctttaatttctcacacgctt |
43201516 |
T |
|
| Q |
311 |
tctttctaggtatattacagcacaacaatcctattcttgtctattgaatactatttcttttactttnnnnnnntaggtggacaattatgtcctttgtata |
410 |
Q |
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| T |
43201515 |
tctttctaggtatattacagcacaacaatcctattcttgtctattgaatactatttcttttactttaaaaaaataggtggacaattatgtcctttgtata |
43201416 |
T |
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| Q |
411 |
taccttgccttttaagtacacttatattttctaccaatattttc |
454 |
Q |
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| T |
43201415 |
taccttgccttttaagtacacttatattttctaccaatattttc |
43201372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 43201863 - 43201685
Alignment:
| Q |
18 |
agaagtacagaaagagtgccaaaaaggtagacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactat |
117 |
Q |
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| T |
43201863 |
agaagtacagaaagagtgccaaaaaggtagacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactat |
43201764 |
T |
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| Q |
118 |
taagaaagtcaatcacatttaagaactcacacgtgagtaactactcattgagctggcatttatacctcacaaacaaata |
196 |
Q |
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| T |
43201763 |
taagaaagtcaatcacatttaagaactcacacgtgagtaactactcattgagctggcatttatacctcacaaacaaata |
43201685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 36233426 - 36233394
Alignment:
| Q |
122 |
aaagtcaatcacatttaagaactcacacgtgag |
154 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
36233426 |
aaagtcaaacacatttaagaactcacacgtgag |
36233394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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