View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13856_low_1 (Length: 742)
Name: NF13856_low_1
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 424 - 734
Target Start/End: Original strand, 36590305 - 36590621
Alignment:
| Q |
424 |
aatcttaaaggttttgagttttgttgttgttaatttttaaaaggtgtctcttcaaaattttcttt-aagagacaatgaccaataacaagtagaaatacat |
522 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36590305 |
aatcttacaggttttgagttttgttgttgttaatttttaaaaggtgtctcttcaaaattttcttttaagagacaatgaccaataacaagtagaaatacat |
36590404 |
T |
|
| Q |
523 |
tttcaaactatcatacatagaaacacttaaatcgttaatctcttaaagcagacattagccagtgataattgatattttttcatgaacttccatttgaaag |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36590405 |
tttcaaactatcatacatagaaacacttaaatcgttaatctc-----gctgacattagccagtgataattgatattttttcatgaacttccatttgaaag |
36590499 |
T |
|
| Q |
623 |
aaaatataaccagttccaagtattggactattcttccaatttg----------tgaagtaaatcaccattaacaaacttcataaaataataaagaatcca |
712 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36590500 |
aaaatataaccaattccaagtattggactattcttccaatttgtgaagcaacatgaagtaaatcaccattaacaaacttcataaaataataaagaatcca |
36590599 |
T |
|
| Q |
713 |
acaattcattagatagaataat |
734 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
36590600 |
acaattcattagataaaataat |
36590621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 101 - 308
Target Start/End: Original strand, 36590057 - 36590259
Alignment:
| Q |
101 |
gggactctagttaaagattaggatcttttataaattgcaaacaaaatcgaactttctttttcacggttaaggggtttagttaaggattagtgcaattaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36590057 |
gggactctagttaaagattaggatcttttataaattgcaaacaaaatcgaactttctttttcacggttaaggggtttagttaaggactagtgcaattaat |
36590156 |
T |
|
| Q |
201 |
ctcnnnnnnnctcatgtattaaatgtccaatatattgagtcaaaaaagactcgttgtttatataacatcatataaagttcacaagaacaaatatagaaaa |
300 |
Q |
| |
|
||| |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
36590157 |
ctc-aaaaaactcaagtattaaatgtccaatatattaagtcaaaaaagactcg----ttatataacatcatataaagttcaaaggaacaaatatagaaaa |
36590251 |
T |
|
| Q |
301 |
caataagt |
308 |
Q |
| |
|
||| |||| |
|
|
| T |
36590252 |
caacaagt |
36590259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University