View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13856_low_11 (Length: 373)

Name: NF13856_low_11
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13856_low_11
NF13856_low_11
[»] chr3 (3 HSPs)
chr3 (179-357)||(29209942-29210117)
chr3 (17-171)||(29209566-29209720)
chr3 (105-163)||(29213015-29213073)
[»] chr2 (2 HSPs)
chr2 (105-147)||(4522248-4522290)
chr2 (110-148)||(1723686-1723724)
[»] chr8 (2 HSPs)
chr8 (108-148)||(34780296-34780336)
chr8 (107-145)||(44273471-44273509)
[»] chr5 (1 HSPs)
chr5 (113-168)||(38676406-38676461)
[»] chr7 (1 HSPs)
chr7 (107-172)||(31221597-31221662)
[»] chr4 (1 HSPs)
chr4 (109-137)||(38302918-38302946)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 179 - 357
Target Start/End: Original strand, 29209942 - 29210117
Alignment:
Q  179 tcttaattcatctcataaaaagaacaatgtcttcattaaaagtgcattttttatgttctcttttaatttcattcaacttttcttacattttaatctcaat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29209942 tcttaattcatctcataaaaagaacaatgtcttcattaaaagtgcattttttatgttctcttttaatttcattcaacttttcttacattttaatctcaat 29210041  T
Q  279 acggttaaaacttattatgcaaatgtttatctattatttaatttacatttatatataacacatttgaagatgcactttc 357  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29210042 acggttaaaac---ttatgcaaatgtttatctattatttaatttacatttatatataacacatttgaagatgcactttc 29210117  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 29209566 - 29209720
Alignment:
Q  17 gtgtattttctactagtagtttcttggatcaaagtgactaagataagatccacttaagaacgaaatacatatttgagagccatcaatgaaggttttgtct 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  29209566 gtgtattttctactagtagtttcttggaccaaagtgactaagataagatacacttaaaaacgaaatacatatttgagagccatcgatgaaagttttgtct 29209665  T
Q  117 aatgtgcacaagtaaaatagtcttgcatcatggacacgtgtatttttaaccattt 171  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  29209666 aatgtgcacaagtaaaatagtcttgcatcatggacacatgtacttttaaccattt 29209720  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 29213015 - 29213073
Alignment:
Q  105 aaggttttgtctaatgtgcacaagtaaaatagtcttgcatcatggacacgtgtattttt 163  Q
    ||||||||||||||||||||||| ||||||  ||||||| |||| |||| ||| |||||    
T  29213015 aaggttttgtctaatgtgcacaactaaaatgatcttgcaccatgcacacatgtgttttt 29213073  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 4522248 - 4522290
Alignment:
Q  105 aaggttttgtctaatgtgcacaagtaaaatagtcttgcatcat 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  4522248 aaggttttgtctaatgcgcacaagtaaaatagtcttgcatcat 4522290  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 1723724 - 1723686
Alignment:
Q  110 tttgtctaatgtgcacaagtaaaatagtcttgcatcatg 148  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  1723724 tttgtctaatgtgcacaagtaaattagtcttgcaccatg 1723686  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 34780296 - 34780336
Alignment:
Q  108 gttttgtctaatgtgcacaagtaaaatagtcttgcatcatg 148  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  34780296 gttttgtctaatgtgcataagtaaaatagtcttgcaccatg 34780336  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 44273509 - 44273471
Alignment:
Q  107 ggttttgtctaatgtgcacaagtaaaatagtcttgcatc 145  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  44273509 ggttttgtctaatgtgcacgagtgaaatagtcttgcatc 44273471  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 38676406 - 38676461
Alignment:
Q  113 gtctaatgtgcacaagtaaaatagtcttgcatcatggacacgtgtatttttaacca 168  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||| ||||| ||||    
T  38676406 gtctaatgtgcacaagtaaattagtcttgcaccatgcacaagtgtgtttttcacca 38676461  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 31221597 - 31221662
Alignment:
Q  107 ggttttgtctaatgtgcacaagtaaaatagtcttgcatcatggacacgtgtatttttaaccatttg 172  Q
    ||||||||||||| |||||| ||||||| |||||||| |||| |||  ||||||||| | ||||||    
T  31221597 ggttttgtctaatatgcacaggtaaaatggtcttgcaacatgtacaactgtatttttcatcatttg 31221662  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 38302918 - 38302946
Alignment:
Q  109 ttttgtctaatgtgcacaagtaaaatagt 137  Q
    |||||||||||||||||||||||||||||    
T  38302918 ttttgtctaatgtgcacaagtaaaatagt 38302946  T

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