View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_12 (Length: 373)
Name: NF13856_low_12
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2549566 - 2549194
Alignment:
| Q |
1 |
tacagcaaacgtggtacaaactttattcttattccttcattacaagtgcttctgaattcactatttaaatagtcaagagccattaacatgaatacatgat |
100 |
Q |
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| T |
2549566 |
tacagcaaacgtggtacaaactttattcttattccttcattacaagtgcttctgaattcactatttaaatagtcaagagccattaacatgaatacatgat |
2549467 |
T |
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| Q |
101 |
atacctcttttatgtcacaaaccagttactaaaacaaggaatcatcatggccaaaaactatggcttccttatttgcatacttgtcatggtgatggatatt |
200 |
Q |
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| T |
2549466 |
atacctcttttatgtcacataccagttactaaaacaaggaatcatcatggccaaaaactatggcttccttatttgcatacttgtcatggtgatggatatt |
2549367 |
T |
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| Q |
201 |
gttgcaggcatactaggaattcaagccgagataactcaaaacaaggtacttaatctctaattagacttaaaacactttggtttcatatgtatgattagat |
300 |
Q |
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| T |
2549366 |
gttgcaggcatactaggaattcaagccgagataactcaaaacaaggtacttaatctctaattagacttaaaacactttggtctcatatgtatgtttagat |
2549267 |
T |
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| Q |
301 |
tcacaatcatattgttagaattacgttagctcaatgtggttttgctaaagcgtcatatgtggattaattctat |
373 |
Q |
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| T |
2549266 |
tcacaatcaacttgttagaattacgataagtcactgtgattttgcaaaagcgacatatgtggcttaaatctat |
2549194 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 36573519 - 36573615
Alignment:
| Q |
155 |
aaactatggcttccttatttgcatacttgtcatggtgatggatattgttgcaggcatactaggaattcaagccgagataactcaaaacaaggtactt |
251 |
Q |
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| T |
36573519 |
aaactatggtttccttgtatgtattgttgtcattctcatggatgttgttgctggcatacttggaattcaagcagaaatagctcaaaataaggtactt |
36573615 |
T |
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