View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_13 (Length: 357)
Name: NF13856_low_13
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 4331930 - 4332262
Alignment:
| Q |
8 |
attatactattttctattaacacgtgtattttgctagttgtctttgaaagtaaccttttttatgttgtcatgtttagtcaaaacattcacctgnnnnnnn |
107 |
Q |
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| T |
4331930 |
attatattattttctattaacacgtgtattttgctagttgtctttgaaagtaaccttttttatgttgtcatgtttagtcaaaacattcacctgaaaaaaa |
4332029 |
T |
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| Q |
108 |
tgattagttaaaacatgtgggtattattatataannnnnnnactaaccttttatgttttgttgtcaatgttttggttggatgtgatcaaagtgtgtgtgt |
207 |
Q |
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| T |
4332030 |
tgattagttaaaacatgtgggtattattatataatttttttactaaccttttatgttttgttgtcaatgttttggttggatgtgatcaaagtgtgtgtgt |
4332129 |
T |
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| Q |
208 |
tagcatttaagttccttttgattggtctaataatctttactctgttttgtttaatattttgggtattgacaacaaagtctacacaaaacatagtcaaaga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332130 |
tagcatttaagttccttttgattggtctaataatctttactttgttttgtttaatattttgggtattgacaacaaagtctacacaaaacatagtcaaaga |
4332229 |
T |
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| Q |
308 |
aataggttcacctgcagcaagtaagggaagagt |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4332230 |
aataggttcacctgcagcaagtaagggaagagt |
4332262 |
T |
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