View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_15 (Length: 350)
Name: NF13856_low_15
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 24 - 333
Target Start/End: Original strand, 37348185 - 37348503
Alignment:
| Q |
24 |
agccatattgtgaacatataaatttgtctaaagtc--aagtcaaatatatagacagtttggcatgagggtttttagcatatatgcatttggatttttctt |
121 |
Q |
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| T |
37348185 |
agccatattgtgaacatataaatttgtctaaagtctcaagtcaaatatatagacagtttggcatgagggtttttagcatatatgcatttggatttttctt |
37348284 |
T |
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| Q |
122 |
cttattagtataa---taatgaatgaatgtttgtacttcttcattcagattacgtagagtcgtagactatgctcgctctatttggtaaataaatatagga |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
37348285 |
cttattagtataataataatgaatgaatgtttgtacttcttcattcagattacgtagagtcgtagactatgcttgctctatttggtaaataaatagagga |
37348384 |
T |
|
| Q |
219 |
ccagctaataacgtagtttatatatgagagaacgaaggttaccaaacaattttctttctaaagtcg----taagtttataaactagttcttgttgtattt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
37348385 |
ccagctaataacgtagtttatatatgagagaacgaaggttaccaaacaattttctttctaaagtcgtaattaagtttataaactaattcttgttgtattt |
37348484 |
T |
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| Q |
315 |
gtcaaacattgtcaataaa |
333 |
Q |
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||||||||||||||||||| |
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| T |
37348485 |
gtcaaacattgtcaataaa |
37348503 |
T |
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