View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_19 (Length: 291)
Name: NF13856_low_19
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 26428295 - 26428517
Alignment:
| Q |
19 |
agtacagctatgatataaaactgatttcatcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacct |
118 |
Q |
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| T |
26428295 |
agtacagctatgatataaaactgatttcatcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacct |
26428394 |
T |
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| Q |
119 |
atgcatttctctttcttatttttgtat------------attaattaattaattaattatgagcttgaattattcaagtattttagcattgaaaagtggt |
206 |
Q |
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| T |
26428395 |
atgcatttctctttcttatttttgtatattaattaattaattaattaattaattaattatgagcttgaattattcaagtattttagcattgaaaagtggt |
26428494 |
T |
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| Q |
207 |
ttatgatctattcagccattata |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
26428495 |
ttatgatctattcagccattata |
26428517 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 28008623 - 28008527
Alignment:
| Q |
69 |
ttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacctatgcatttctctttcttatttttgtatatta-attaattaattaatta |
165 |
Q |
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||||||||| |||||||| ||| |||||| ||||||||||| ||||||||||||||||||||| || ||||||| | | | |||||||||||||||| |
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| T |
28008623 |
ttgtgggttcagaaaattcaggggaagttggaggcagttac-caatacctatgcatttctcttttttttttttgtttttaacattaattaattaatta |
28008527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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