View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_20 (Length: 275)
Name: NF13856_low_20
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 41745485 - 41745724
Alignment:
| Q |
13 |
aaaatatatatgtggttttttcaaatatgagttgtatgtacaagatataatataatttnnnnnnnntgtcagcagaaacatagaaaatttattgcagttt |
112 |
Q |
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| T |
41745485 |
aaaatatatatgtggttttttcaaatatgagttgtatgtacaagatataatttaa------aaaaatgtcagcagaaacatagaaaatttattgcagttt |
41745578 |
T |
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| Q |
113 |
ggcaactatccatttcttctcattaatttgtatagaatcaatttcatagcaaccttcacgccacgcaggacatgtatttttgggccctaaagtacatgtt |
212 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745579 |
ggcaaccatccatttcttctcattaatttgtacagaatcaatttcagagcaaccttcacgccacgcaggacatgtatttttgggccctaaagtacatgtt |
41745678 |
T |
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| Q |
213 |
tgccacaaggaaataatattgtttaattttagcaatggttgcaatc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745679 |
tgccacaaggaaataatattgtttaattttagcaatggttgcaatc |
41745724 |
T |
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