View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_3 (Length: 598)
Name: NF13856_low_3
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 44366521 - 44367094
Alignment:
| Q |
18 |
gtatcatgtacaatgatgctttctaccattagatcaataaatgacatcatattacatttgattcgacgtaagatctattaatcatattgtgaaaacaagc |
117 |
Q |
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| T |
44366521 |
gtatcatgtacaaggatgctttctaccattagatcaataaatcacattatattacatttgattcgacgtaagatctattaatcatattgtgaaaacaagt |
44366620 |
T |
|
| Q |
118 |
ttgcgtatgatataaaatttgtctcaccttttcaacataaaattggtcatatatatgacagtagcaagacacacatgcacagtacatgggtataaaatta |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44366621 |
ttgggtatgatataaaatttgtctcaccttttcaacataaaattggtcatatatatgacagtagcaagacacacatgcacagtacatgggtataaaatta |
44366720 |
T |
|
| Q |
218 |
gcataaacatctcacgttacatgggtatggtatggg-actcccataatgggagtgacattaagacagtaaataaaaaatgagcagccaacttagatctag |
316 |
Q |
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| T |
44366721 |
gcataaacatctcacgttacatgggtatggtacggggactcccataatgggagtgacattaagacagtaaataaaaaatgagcagccaacttagatctag |
44366820 |
T |
|
| Q |
317 |
agccacccaaatcaagttattcagatttaaggggtacatggactcacagcatatcaatataactaattctacaaattgaataaatcccttcatattgaaa |
416 |
Q |
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| T |
44366821 |
agccacccaaatcaagttattcagatttaaggggtacatggactcacagcatatcaatatcactaattctacaaattgaataaatcccttcatattgaaa |
44366920 |
T |
|
| Q |
417 |
aagaaattctacaaatcataacaaacccattttctattttatgtatggaatatatatcatagaggataataattactaacatttgccattaannnnnnnn |
516 |
Q |
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| T |
44366921 |
aagaaattctacaaatcataacaaacccattttctattttatgtatggaatatatatcatagaggataataattactaacatttgccattattttatttt |
44367020 |
T |
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| Q |
517 |
nnnnnnnnngctaagcatgagaaatacaagtccgttgataacttgatatgcacgtgaagcacatacagtattat |
590 |
Q |
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| T |
44367021 |
ttattttttgctaagcatgagacatacaagtccgttgataacttgatatgcacgtgaagcacatacagaattat |
44367094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 307 - 453
Target Start/End: Original strand, 35118259 - 35118405
Alignment:
| Q |
307 |
ttagatctagagccacccaaatcaagttattcagatttaaggggtacatggactcacagcatatcaatataactaattctacaaattgaataaatccctt |
406 |
Q |
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| T |
35118259 |
ttagatctagagcaatataaaccaagttattcagatttgaggagtacatggactcacaacatatcattagcactaattctataaattgaataaatccctt |
35118358 |
T |
|
| Q |
407 |
catattgaaaaagaaattctacaaatcataacaaacccattttctat |
453 |
Q |
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| T |
35118359 |
catattgaaaaagaaattctacaaatcatcataaacccattttctat |
35118405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 35118123 - 35118183
Alignment:
| Q |
270 |
tgacattaagacagtaaataaaaaatgagcagccaacttagatctagagccacccaaatca |
330 |
Q |
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|||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35118123 |
tgacattaaggcggtgaataaaaaatgagcagccaatttagatctagagccacccaaatca |
35118183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 6126133 - 6126175
Alignment:
| Q |
37 |
tttctaccattagatcaataaatgacatcatattacatttgat |
79 |
Q |
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| T |
6126133 |
tttctaccattcgatcaataaatcacatcatatcacatttgat |
6126175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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