View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_4 (Length: 522)
Name: NF13856_low_4
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Complemental strand, 4128789 - 4128316
Alignment:
| Q |
19 |
gctgcaactgtaatttaaaaccttgcactatccgtcatacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttc |
118 |
Q |
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| T |
4128789 |
gctgcaactgtaatttaaaaccttgcactatccgtcatacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttc |
4128690 |
T |
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| Q |
119 |
tctacaatgtagactattccaaggaagttttggcttgatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtggcaatc |
217 |
Q |
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| T |
4128689 |
tctacaatgtagactattccaaggaagttttggcttgatgaaagtggggagagattaatgcagtggccaattgaagagttagaaaaacttggtggcaatc |
4128590 |
T |
|
| Q |
218 |
aaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtgt |
317 |
Q |
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| T |
4128589 |
aaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatcacaggtacgtaattaaactaatgcatgttgtgt |
4128490 |
T |
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| Q |
318 |
gttttttcttatgaagcacgaacacgggacatgacacttatattaacacttgtaaacatttgtaaacataaatgattaaatgtaacttactatatgtgtc |
417 |
Q |
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| T |
4128489 |
--tttttcctatgaagcacgaacacgggacatgacacttatattaacacttgtaaacacttgtaaacataaacgattaaatgtaacttactatatgtgtc |
4128392 |
T |
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| Q |
418 |
gttgtcatgtcattgtcaaatactaacacatgtcagactcgccagccgtcgatttgaatggttggtgttacataga |
493 |
Q |
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| T |
4128391 |
gctgtcatgtcattgtcaaatactaacacatgtcagactcgccagccgtcgatttgaatggttggtgttacataga |
4128316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 4137403 - 4137098
Alignment:
| Q |
20 |
ctgcaactgtaatttaaaaccttgcactatccgtcatacaattatattatagaa--tgctctagttaatagttacaagatttgatgaatggttattattt |
117 |
Q |
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|||||||| ||||||||||||||| |||||||| ||| |||||||| || || || ||||| ||||||||| ||||||||||||||| ||| | ||| |
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| T |
4137403 |
ctgcaactacaatttaaaaccttgcgctatccgttatataattatatattataacctgatctagataatagttataagatttgatgaatgattagtgttt |
4137304 |
T |
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| Q |
118 |
ctctacaatgtagactattccaaggaagttttggcttgatga-agtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtggcaat |
216 |
Q |
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| T |
4137303 |
atttacaatgtagacaattccaaggaagttctggcttgataagaatgggaagcaattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaa |
4137204 |
T |
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| Q |
217 |
caaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtg |
316 |
Q |
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| T |
4137203 |
caaatcaatatcaccggagaaacactccaaagtggatcaactcttgaagtaaaaggtatcactgcatctcaggtacacaactaaactgattcatgttgtg |
4137104 |
T |
|
| Q |
317 |
tgtttt |
322 |
Q |
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|||||| |
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| T |
4137103 |
tgtttt |
4137098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 55 - 355
Target Start/End: Complemental strand, 4142438 - 4142137
Alignment:
| Q |
55 |
atacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatgtagactattccaaggaagttttggctt |
154 |
Q |
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|||||| ||||||||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
4142438 |
atacaactatattataacatgatctagataatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggctt |
4142339 |
T |
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| Q |
155 |
gatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaaactttgtggcaatcaaatcaatatcactggagaaacactccaaagtggat |
253 |
Q |
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| T |
4142338 |
gatgaaagtgggaagcgattactgcagtggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggat |
4142239 |
T |
|
| Q |
254 |
caactcttaaagtaaaaggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtgtgttttttcttatgaagcacgaacacgggacatgaca |
353 |
Q |
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| T |
4142238 |
caactcttgaagtaataggtatcactgcatctcaggtacgtaattaaatcgatgcatgctatgagttttctcctacgaagtacagacacaagacatgaca |
4142139 |
T |
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| Q |
354 |
ct |
355 |
Q |
| |
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|| |
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| T |
4142138 |
ct |
4142137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 4117450 - 4117370
Alignment:
| Q |
124 |
aatgtagactattccaaggaagttttggcttgatgaa-gtggggagagattaatgcagtggccaattgaagaattagaaaa |
203 |
Q |
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| T |
4117450 |
aatgtagacaattccaaggaaagtttggctagataaaagtgggaagagattgatgcaatggccaattgaagaaatagaaaa |
4117370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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