View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13856_low_5 (Length: 520)
Name: NF13856_low_5
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13856_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 59 - 493
Target Start/End: Complemental strand, 39784832 - 39784407
Alignment:
| Q |
59 |
tacttgctagcaaatgttgcatcctttgttctctccccatcttcatggcttcaaagttgggaatatatgtcccttcatcattaaggcactgtgttcactg |
158 |
Q |
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| T |
39784832 |
tacttgctagcaaatgttgcatcctttgttctctccccatcttcatggcttcaaagttgggaatatatgtcccttgatcattaaggcactgt-------- |
39784741 |
T |
|
| Q |
159 |
tagccactcaccatacctcctatgcttgcgactgaacttatagagagcctgagcatcatgagaaacctcaaatgcaacagttgatcattgccaacaaatt |
258 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
39784740 |
-aggcactcaccatacctcctatgcttgcgactgaacttatagagagcctgagcatcatgagaaacctcaaacgcaacagctgatcattgccaacaaatt |
39784642 |
T |
|
| Q |
259 |
aagtcacccnnnnnnnnacgatttggatcttattaatatgtacctaatttctagctaattgttataaccaattggtaactgtattactataaaataacat |
358 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784641 |
aagtcacccttttttttacgatttgggtcttattaatatgtacctaatttctagctaattgttataaccaattggtaactgtattactataaaataacat |
39784542 |
T |
|
| Q |
359 |
tattcggttaattaggcttaacttgtgtgtttgagcaactgatcacttacgaacttttttatatacattttttatagcataaaagtttatttgagacgga |
458 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784541 |
tattcggttaattaggctttacttgtgtgtttgagcaaccgatcacttatgaacttttttatatacattttttatagcataaaagtttatttgagacgga |
39784442 |
T |
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| Q |
459 |
ctctggaaatttactagaatggggatagacttcaa |
493 |
Q |
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|||| |||||||||| ||||||| ||||||||||| |
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| T |
39784441 |
ctctagaaatttactggaatgggaatagacttcaa |
39784407 |
T |
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