View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13856_low_8 (Length: 404)

Name: NF13856_low_8
Description: NF13856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13856_low_8
NF13856_low_8
[»] chr6 (2 HSPs)
chr6 (81-340)||(1514719-1514991)
chr6 (15-46)||(1514666-1514697)
[»] chr5 (6 HSPs)
chr5 (88-221)||(43222111-43222244)
chr5 (60-219)||(35650275-35650434)
chr5 (94-219)||(9465734-9465859)
chr5 (104-221)||(14733556-14733672)
chr5 (103-148)||(43453590-43453635)
chr5 (151-219)||(3440888-3440956)
[»] chr2 (1 HSPs)
chr2 (55-219)||(373123-373287)
[»] chr7 (7 HSPs)
chr7 (88-219)||(27386897-27387028)
chr7 (87-221)||(675979-676113)
chr7 (60-221)||(20400009-20400166)
chr7 (160-221)||(37134378-37134439)
chr7 (171-221)||(31322032-31322082)
chr7 (180-221)||(1193657-1193698)
chr7 (181-233)||(23264006-23264058)
[»] chr3 (5 HSPs)
chr3 (158-221)||(43624333-43624396)
chr3 (166-222)||(36011001-36011057)
chr3 (182-219)||(778853-778890)
chr3 (126-219)||(28229361-28229454)
chr3 (157-209)||(24704885-24704937)
[»] chr8 (6 HSPs)
chr8 (157-219)||(11180238-11180300)
chr8 (55-221)||(21492725-21492893)
chr8 (98-221)||(15901446-15901569)
chr8 (151-209)||(16314002-16314060)
chr8 (176-208)||(28449846-28449878)
chr8 (126-226)||(29916407-29916506)
[»] chr4 (1 HSPs)
chr4 (87-219)||(3512283-3512415)
[»] chr1 (2 HSPs)
chr1 (88-222)||(24413242-24413372)
chr1 (151-212)||(5446779-5446840)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 81 - 340
Target Start/End: Original strand, 1514719 - 1514991
Alignment:
Q  81 gataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatca 180  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  1514719 gataacaacataaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatttcgttcataatta 1514818  T
Q  181 caatctccatttatttttataaatagagatgatctcaact-ccgatagaactacctcaac------------nnnnnnnnnctacctcaacaattaatta 267  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||                     |||||||||||||||||||    
T  1514819 caatctccatttatttttataaatagagatgatctcaactcccaataaaactacctcaacaattgcaccaaaaaaataaaactacctcaacaattaatta 1514918  T
Q  268 tgacatcttcatgcaaattcgcagtcttgctccatccgccaaaaaccatgcagttgtgagatctcttataaac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1514919 tgacatcttcatgcaaattcgcagtcttgctccatccgccaaaaaccatgcaattgtgagatctcttataaac 1514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 1514666 - 1514697
Alignment:
Q  15 gagcacgatagaacgagttgagatcctcttcg 46  Q
    ||||||||||||||||||||||||||||||||    
T  1514666 gagcacgatagaacgagttgagatcctcttcg 1514697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 43222111 - 43222244
Alignment:
Q  88 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 187  Q
    ||||| ||||||||||||||||||||| || |||| || |||||||| |||| || || ||  ||||| ||||||||||||| |||||||| ||||||||    
T  43222111 acacataaaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctctttcataatgacaatctc 43222210  T
Q  188 catttatttttataaatagagatgatctcaactc 221  Q
    ||||||||||||||||| ||||  ||||||||||    
T  43222211 catttatttttataaatggagagtatctcaactc 43222244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 35650275 - 35650434
Alignment:
Q  60 tccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattg 159  Q
    ||||||||||  | ||||| |||||  |||| |||||| ||| |||||||||||| || ||| ||||||||||||||||  || || ||| ||||| |||    
T  35650275 tccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctattttttg 35650374  T
Q  160 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 219  Q
    |||||||||  ||  ||||  ||||||||||||||||| |||||| |||| |||||||||    
T  35650375 tgtctatcttttttctaattgcaatctccatttattttaataaatggagaggatctcaac 35650434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 9465734 - 9465859
Alignment:
Q  94 aaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccattta 193  Q
    |||| |||||||||||||||| || ||| |||||||||||| |||  |  || ||| |||||  |||||||||||| ||||||||  |||||||||||||    
T  9465734 aaaaatttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctctttcataatggcaatctccattta 9465833  T
Q  194 tttttataaatagagatgatctcaac 219  Q
    |||||||||||  ||| |||||||||    
T  9465834 tttttataaatgaagaggatctcaac 9465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 14733556 - 14733672
Alignment:
Q  104 aaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaa 203  Q
    ||||||||||  || |||| | |||||||||||||| || || | | ||||| ||||||||||||| ||| |||| ||||||| ||||||||||||||||    
T  14733556 aaataattaacgatggtgggactcatttaataataagacccaccgcttattt-ttgtgtctatctctttcctaatgacaatcttcatttatttttataaa 14733654  T
Q  204 tagagatgatctcaactc 221  Q
    | |||| |||||||||||    
T  14733655 tggagaggatctcaactc 14733672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 43453635 - 43453590
Alignment:
Q  103 aaaataattaatcatagtggaattcatttaataataaaactcatca 148  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||    
T  43453635 aaaataattaatgatagtggaatctatttaataataaaactcatca 43453590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 3440888 - 3440956
Alignment:
Q  151 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 219  Q
    ||||| ||||||||||||| ||| ||||   |||||||||||||||| |||||| |||| |||||||||    
T  3440888 tattttttgtgtctatctctttcctaattgtaatctccatttattttaataaatggagaggatctcaac 3440956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 373287 - 373123
Alignment:
Q  55 tcttatccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatt 154  Q
    |||| ||||||||||| | ||  ||||||||  | ||||||||| || |||||||||||| || |||| |||||||||||||||  || || ||| ||||    
T  373287 tcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatt 373188  T
Q  155 tattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 219  Q
    | ||||||||||||  ||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  373187 ttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatctcaac 373123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 27387028 - 27386897
Alignment:
Q  88 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 187  Q
    ||||||||||| |||||||||||||||  | || ||| ||||||||| |||  || || | | ||||| ||||||||||||| |||||||| ||||||||    
T  27387028 acacaaaaaatcttgaaaataattaatagtggtagaactcatttaatgataggacacaccgcttattttttgtgtctatctctttcataataacaatctc 27386929  T
Q  188 catttatttttataaatagagatgatctcaac 219  Q
    ||||||||||||||||| |||| |||||||||    
T  27386928 catttatttttataaatggagaggatctcaac 27386897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 676113 - 675979
Alignment:
Q  87 aacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatct 186  Q
    |||||||||||| ||||||||||||||| || |||  | ||||||||| |||  | ||| ||||||||| |||||| |||||| | |||||| ||||||     
T  676113 aacacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctcttacataatgacaatcg 676014  T
Q  187 ccatttatttttataaatagagatgatctcaactc 221  Q
     |||||||||||||||||||||| |||||||||||    
T  676013 tcatttatttttataaatagagaggatctcaactc 675979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 20400009 - 20400166
Alignment:
Q  60 tccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattg 159  Q
    ||||||||||||| || || ||||||  ||| ||||||| || |||||||||||| || |||  | ||||||||| |||| || || |||  |||| |||    
T  20400009 tccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatttgttg 20400108  T
Q  160 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 221  Q
    |||||||||| |||||||| | |||    |||||||| ||||||| |||| |||||||||||    
T  20400109 tgtctatctctttcataatgaaaat----atttatttatataaatggagaggatctcaactc 20400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 37134378 - 37134439
Alignment:
Q  160 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 221  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  37134378 tgtctatctctatcataatgacaatctccgtttatttttataaatggagaggatctcaactc 37134439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 31322082 - 31322032
Alignment:
Q  171 ttcataatcacaatctccatttatttttataaatagagatgatctcaactc 221  Q
    |||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  31322082 ttcataatgacaatcttcatttatttttataaatggagaggatctcaactc 31322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 1193698 - 1193657
Alignment:
Q  180 acaatctccatttatttttataaatagagatgatctcaactc 221  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  1193698 acaatatccatttatttttataaatggagatgatcccaactc 1193657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 23264058 - 23264006
Alignment:
Q  181 caatctccatttatttttataaatagagatgatctcaactccgatagaactac 233  Q
    |||||||||||||||||||||||| || | ||||||||||  | |||||||||    
T  23264058 caatctccatttatttttataaatggataagatctcaacttagttagaactac 23264006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 43624396 - 43624333
Alignment:
Q  158 tgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 221  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43624396 tgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatctcaactc 43624333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 36011001 - 36011057
Alignment:
Q  166 tctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactcc 222  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  36011001 tctctttcataattacaatctccatttatttttataaattgagaggatctcaactcc 36011057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 778890 - 778853
Alignment:
Q  182 aatctccatttatttttataaatagagatgatctcaac 219  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  778890 aatctccatttatttttataaatggagaagatctcaac 778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 28229454 - 28229361
Alignment:
Q  126 tcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 219  Q
    ||||||||| |||  ||||| ||| ||||| |||||||||| || ||| ||||  ||  ||||||||||||| |||||| |||| |||||||||    
T  28229454 tcatttaatgataggactcaccacctattttttgtgtctatatctttcctaattgcacactccatttattttaataaatggagaggatctcaac 28229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 24704937 - 24704885
Alignment:
Q  157 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 209  Q
    |||| |||||||| |||||||  |||||||||| |||||||||||||| ||||    
T  24704937 ttgtatctatctctttcataacgacaatctccaattatttttataaatggaga 24704885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 11180300 - 11180238
Alignment:
Q  157 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 219  Q
    ||||||||||||| ||| |||  |||||||| |||||||||||||||| ||||||||||||||    
T  11180300 ttgtgtctatctctttcttaaagacaatctcaatttatttttataaatggagatgatctcaac 11180238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 21492725 - 21492893
Alignment:
Q  55 tcttatccatttcttctacttgaaaagataacaacaca-aaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatat 153  Q
    |||| ||||||||||| | ||| | ||||||  ||||| |||||| |||||||||| |||| || |||| |   |||||||||||  | ||| ||| |||    
T  21492725 tcttttccatttcttccatttggagagataaagacacacaaaaatcttgaaaataagtaatgatggtgggacctatttaataatagtattcaccacctat 21492824  T
Q  154 ttatt-gtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 221  Q
    || || ||||||||||| ||| ||||  ||||||||||||||||||||||||  | | |||||||||||    
T  21492825 ttttttgtgtctatctctttcctaatggcaatctccatttatttttataaatgaaaaagatctcaactc 21492893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 15901446 - 15901569
Alignment:
Q  98 ttttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttt 197  Q
    ||||||||||||||||| |||||   |  ||||||||||||  || ||  || ||||| |||| |||||||| ||||||||  |||||||||||||||||    
T  15901446 ttttgaaaataattaatgatagtaagacccatttaataataggacccacgacctattttttgtatctatctctttcataatggcaatctccatttatttt 15901545  T
Q  198 tataaatagagatgatctcaactc 221  Q
     ||||||  ||| ||||| |||||    
T  15901546 aataaatgaagaagatcttaactc 15901569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 16314002 - 16314060
Alignment:
Q  151 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 209  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| |||||| ||||    
T  16314002 tattttttgtatctatctctttcataatgacaatctccatttattttaataaatggaga 16314060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 28449878 - 28449846
Alignment:
Q  176 aatcacaatctccatttatttttataaatagag 208  Q
    ||||| |||||||||||||||||||||||||||    
T  28449878 aatcataatctccatttatttttataaatagag 28449846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 29916407 - 29916506
Alignment:
Q  126 tcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactccgat 225  Q
    |||||||||||||||||| | ||  ||||| || ||||||| || ||| ||||  ||||||  |||||||||||||||| |||| |||||| |||| |||    
T  29916407 tcatttaataataaaacttaccatctatttttt-tgtctatttctttcctaatatcaatctttatttatttttataaatggagaagatctcgactcggat 29916505  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 3512415 - 3512283
Alignment:
Q  87 aacacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaa-tc 185  Q
    ||||||||||| ||| |||||||||||| || |||||||||||||||| ||| ||| || ||| | ||| || |||||||||| ||| ||||  ||| ||    
T  3512415 aacacaaaaaaatttaaaaataattaataatggtggaattcatttaatgatagaacacaccac-ttttttttttgtctatctctttcttaattgcaattc 3512317  T
Q  186 tccatttatttttataaatagagatgatctcaac 219  Q
    ||||||||||   |||||| |||| |||||||||    
T  3512316 tccatttattaaaataaatggagaggatctcaac 3512283  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 24413372 - 24413242
Alignment:
Q  88 acacaaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatctcgttcataatcacaatctc 187  Q
    ||||||||||| ||||||||||||||| || |||| |  |||||||| |||  || || ||   |||| |||||||||||    ||||||| ||||| |     
T  24413372 acacaaaaaatcttgaaaataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatc----tcataatgacaatata 24413277  T
Q  188 catttatttttataaatagagatgatctcaactcc 222  Q
    ||||||||||||||||| |||| ||||||||||||    
T  24413276 catttatttttataaatggagaggatctcaactcc 24413242  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 5446779 - 5446840
Alignment:
Q  151 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatga 212  Q
    ||||| ||||||||||||| ||  | |  |||||||||||||||||||||||||||||||||    
T  5446779 tattttttgtgtctatctcttttcttacgacaatctccatttatttttataaatagagatga 5446840  T

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