View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13857_high_2 (Length: 371)
Name: NF13857_high_2
Description: NF13857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13857_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 67 - 355
Target Start/End: Complemental strand, 28123226 - 28122938
Alignment:
| Q |
67 |
acataatcaagctttgaaacacatgcaaagccaactcaatacacacacctacatgttgtactcgttggagaaaagaccgattcatagacagaactacaat |
166 |
Q |
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| T |
28123226 |
acataatcaagctttgaaacacatgcaaagccaactcaatacacacacatacatgctgtactcgttggagaaaagaccgattcatagacagaactacaat |
28123127 |
T |
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| Q |
167 |
aaacatcaatcttaaacctttttattctctcgcaacgaaactaaaagcgatatacccttactcctagttacacacaacaagttggacgcgcaaggactta |
266 |
Q |
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| T |
28123126 |
atacatcaatcttaaacctttttattctctcgcaacgaaactaaaagcgatatacccttactcctagttacacacaacaagttggacgcgcaagaactta |
28123027 |
T |
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| Q |
267 |
taaatatagaatgtaaagtttgcaaacatgaaacaacactttcacacatagcatgcattgatcattatgagatacatatactgtacatg |
355 |
Q |
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| T |
28123026 |
taaatatagaatgtaaagtttgcaaacatgaaacaacactttcacacatagtatgcattgatcattatgagatacatatactgcacatg |
28122938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 28123339 - 28123298
Alignment:
| Q |
29 |
atccagcgtcacaaaatcatggtaaaactagcattgggacat |
70 |
Q |
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| T |
28123339 |
atccagcttcacaaaatcatggtaaaactagcactgggacat |
28123298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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