View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13857_high_3 (Length: 345)
Name: NF13857_high_3
Description: NF13857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13857_high_3 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 75 - 327
Target Start/End: Complemental strand, 11709421 - 11709167
Alignment:
| Q |
75 |
ctcaaaagaagaaatagtttgaaaa-gacaataagccatactaacctataaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaac |
173 |
Q |
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| T |
11709421 |
ctcaaaagaagaaatagtttgaaaaagacaataagccatactaacctataaaagaagctaatatacaagtctaactgatgtcttttttaccttaacaaac |
11709322 |
T |
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| Q |
174 |
tttattgtggaagttgcaaggcaactaacaagaagtaagtttaaccaattttagttgccttgtaacttacttaactgattttgcaactaaaag-nnnnnn |
272 |
Q |
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| T |
11709321 |
tttattgtgcaagttgcaaggcaactaacaagaaataagtttaaccaattttagttgccttgcaacttacttaactgattttgcaactaaaagttttttt |
11709222 |
T |
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| Q |
273 |
nngttttactttactgaacttgcaactaacttaactgatatagcaatgaaatcct |
327 |
Q |
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| T |
11709221 |
ttgttttactttactgaacttgcaactaacttaactgatatagcaatgaaatcct |
11709167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 11710131 - 11709937
Alignment:
| Q |
31 |
caaaatgacattcattttagtaatatgcgactagtttgaaattcctc-------aaaag--aagaaatagtttgaaaagacaataagccatactaaccta |
121 |
Q |
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| T |
11710131 |
caaaatgacatacattttagtaatatgtgaccagtttgaaattccttcaaaaaaaaaagcaaaaaaacagtttgcaaagacaataaaccatgctaatcta |
11710032 |
T |
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| Q |
122 |
taaaagaagctcatatacaagtctaactgatgtcttttttaccttaacaaactttattgtggaagttgcaaggcaactaacaagaagtaagtttaa |
217 |
Q |
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| T |
11710031 |
taaaggaagctcatg-acaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagtttaa |
11709937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 53695 - 53658
Alignment:
| Q |
282 |
tttactgaacttgcaactaacttaactgatatagcaat |
319 |
Q |
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| T |
53695 |
tttactgaacttgcaactaacttaactgatatagcaat |
53658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 22772327 - 22772292
Alignment:
| Q |
284 |
tactgaacttgcaactaacttaactgatatagcaat |
319 |
Q |
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| T |
22772327 |
tactgaacttgcaactaagttaactgatatagcaat |
22772292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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