View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13857_low_4 (Length: 319)
Name: NF13857_low_4
Description: NF13857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13857_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 20366455 - 20366735
Alignment:
| Q |
1 |
cagagagtatgccaccagctgaacaagaaccttttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttac |
100 |
Q |
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|||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20366455 |
cagaaagtatgcaaacagctgaacaagaaccttttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttac |
20366554 |
T |
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| Q |
101 |
tttttcacttaaaaatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagacataaagacgagttgtgaaaa |
200 |
Q |
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| T |
20366555 |
tttttcacttaaaaaaattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagacata----------------- |
20366637 |
T |
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| Q |
201 |
attaaagggcagcccttgtgatggtgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaa |
300 |
Q |
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| T |
20366638 |
----aagggcagcccttgtgatggcgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtaccttgtatgtcaa |
20366733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 20373678 - 20373856
Alignment:
| Q |
34 |
ttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttactttttcacttaaaaatattattgttgaaataaa |
133 |
Q |
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| T |
20373678 |
ttctatatggttggtattaatagctagcacaagtctttacccaattatttttctccatccctcttactttttcacttaaaaaaattattgttgaaataaa |
20373777 |
T |
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| Q |
134 |
attttcgtaggttaaatagtagaacataacatcttatgagtttagacataaagacgagttgtgaaaaattaaagggcag |
212 |
Q |
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| T |
20373778 |
aatttcgtaggttgaatagtagaacataacatcttatgagtttagacataaagacgagtggtgaaaaattaaagggcag |
20373856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 20373971 - 20374060
Alignment:
| Q |
213 |
cccttgtgatggtgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaa |
302 |
Q |
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| T |
20373971 |
cccttatgatggtgaaagattaatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaa |
20374060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 20366126 - 20366237
Alignment:
| Q |
77 |
attaaatttctccatccctcttactttttcacttaaaaatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagttt |
176 |
Q |
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||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||| |||| |||||| ||||||||||||||||| ||| |||||| |
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| T |
20366126 |
attaaatttctccattcctcttacttttccacttagaaa-attattgttgaaataaaaatttcataggttgaatagtagaacataacaacttgtgagttg |
20366224 |
T |
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| Q |
177 |
agacataaagacg |
189 |
Q |
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| T |
20366225 |
agatataaagacg |
20366237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 20386367 - 20386474
Alignment:
| Q |
81 |
aatttctccatccctcttactttttcacttaaaaatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagac |
180 |
Q |
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||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||| ||| |
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| T |
20386367 |
aatttctccattcctcttattttcccacttaaaaa-attattgttgaaataaaaatttcatagattgaatagtagaacataacatcttatgagttgagat |
20386465 |
T |
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| Q |
181 |
ataaagacg |
189 |
Q |
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| T |
20386466 |
ataaagacg |
20386474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 20386555 - 20386615
Alignment:
| Q |
242 |
taatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaa |
302 |
Q |
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|||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
20386555 |
taatattaatacttattggagaagattaattgtttatataattgtacctcgtatgtcaaaa |
20386615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 20366372 - 20366400
Alignment:
| Q |
274 |
tttatacaattgtacctcgtatgtcaaaa |
302 |
Q |
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| T |
20366372 |
tttatacaattgtacctcgtatgtcaaaa |
20366400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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