View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13857_low_5 (Length: 285)
Name: NF13857_low_5
Description: NF13857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13857_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 19514564 - 19514314
Alignment:
| Q |
18 |
caatacccactctcataacatgcacattcattttaacattattgttgtctactccagcactatgtgctagtgctcccactaaagcagcatctgaatttga |
117 |
Q |
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| T |
19514564 |
caatacccactctcataacatgcacattcattttaacattattgttgtctactccagcactatgtgctagtgctcccactaaagcaacatctgaatttga |
19514465 |
T |
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| Q |
118 |
gtttcttaaggttgctccatctgaatttgttgggacagtgcaagatgttgttggcattttgcaagaagtaatgtccattctttctcaatttggtggttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19514464 |
gtttcttaaggttgctccatctgaatttgttgggacagtgcaagatgttgttggcattttgcaagaagtaatgtccattctttctcaatttggtggttct |
19514365 |
T |
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| Q |
218 |
ggatttggagattcacgtctctctaatgctgtttctgattgcattgatatg |
268 |
Q |
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| T |
19514364 |
ggatttggagattcacgtctctctaatgctgtttctgattgcattgatatg |
19514314 |
T |
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