View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13857_low_6 (Length: 246)
Name: NF13857_low_6
Description: NF13857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13857_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37799051 - 37798824
Alignment:
| Q |
1 |
tttggctttgtgacagatatgatgatatgtctaaa-gtgagggagtgttttaatgataatagacattccaagtaaatttagtgttttaaatcttgttata |
99 |
Q |
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| T |
37799051 |
tttggctttgtgacagatatgat---atgtctaaaagtgagggagtgttttaatgataatagacattccaagtaaatttagtgttttaaatcttgttata |
37798955 |
T |
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| Q |
100 |
ctattttttgtacttagtttgttgaagaaagaacaacaatcttgttctgagataacaataagccaacaagaataag---aaaggaactgtgttagaaaat |
196 |
Q |
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| T |
37798954 |
ctaatttttgtacttggtttgttgaagaaagaacaacaatcttgttctgagataacaataagccaacaagaataagaataaaggaactgtgttagaaaat |
37798855 |
T |
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| Q |
197 |
aaagaatgccatcataaagttccctcaccat |
227 |
Q |
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| T |
37798854 |
aaagaatgccatcataaagttccctcaccat |
37798824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 8571217 - 8571146
Alignment:
| Q |
124 |
aagaaagaacaacaatcttgttctgagataacaataagccaacaagaataagaaaggaactgtgttagaaaa |
195 |
Q |
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| T |
8571217 |
aagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaaaa |
8571146 |
T |
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