View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13858_high_6 (Length: 242)
Name: NF13858_high_6
Description: NF13858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13858_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 18056310 - 18056538
Alignment:
| Q |
20 |
atactatactaacggaatcttactctaaatagattttattctgtaataatatagaattatgatttaactat-atannnnnnnaaagttaattaaggaagt |
118 |
Q |
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| T |
18056310 |
atactatactaacagaatcttactctaaatagattttattctgtaataatatagaattatgatttaattattattttttttttaagttaattaaggaagt |
18056409 |
T |
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| Q |
119 |
ttatttagtgaattaaattcacgctcttttttgtttgtccatta-----ctacgtatctatttcgatataaacaataaacaatgaggaatgggactctag |
213 |
Q |
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| T |
18056410 |
ttatttagtgaattaaattcgcgatcttttttgtttgtccattatttcactacgtatctatttcgatataaacaataaacaataaggaatgggactctag |
18056509 |
T |
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| Q |
214 |
aaaaagacaaattatccatcctagaatcc |
242 |
Q |
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| T |
18056510 |
gaaaagacaaattatccatcctagaatcc |
18056538 |
T |
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