View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13858_low_3 (Length: 425)
Name: NF13858_low_3
Description: NF13858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13858_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 37597390 - 37597801
Alignment:
| Q |
1 |
atcacctaaaattaccatgcttgccttgaacaaaaaaggttaaatcattaaccaaagaccaaaggttttgttttgttgtatacagtgacaaaaactgaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37597390 |
atcatctaaaattaccatgcttgccttgaacaaaaaaggttaaatcattaaccaaagaccaaaggttt-----tgttgtatacagtgacaaaaactgaaa |
37597484 |
T |
|
| Q |
101 |
atgttgttggatgacaatgaatgatcaaaggatgagttcattgagttggaacatgttcaagtggttaacttcaacaataagctgacacatacatatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37597485 |
atgttgttggatgacaatgaatgatcaaaggatgagttcattgagttggaacatgttcaagtggttaacttcaacaataagctgacacatacatatgtca |
37597584 |
T |
|
| Q |
201 |
aattacaaaggttgaataccctcctatgacagtgctggtaacaaccaatgctcttcttcacatgttttaagtacaacatgaattgacctgctttgttagt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37597585 |
aattacaaaggttgaataccctcctatgtcagtgctggtaacaaccaatgctcttcttcacatgttttaagtacaacatgaattgacctgctttgttagt |
37597684 |
T |
|
| Q |
301 |
tgttggaattttgtgaaatagtacatttatatatatgcataacaaaacaatacctacctatgatagtagtagcacctacacaatgaattttgtgatattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37597685 |
tgttggaattttgtgaaatagtacatttatatatatgcataacaaaacaatacctacctatgatagtagtagcacctacacaatgaattttgtgatattg |
37597784 |
T |
|
| Q |
401 |
ctggtaacatattcttc |
417 |
Q |
| |
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|||||||||| |||||| |
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| T |
37597785 |
ctggtaacattttcttc |
37597801 |
T |
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