View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13859_high_2 (Length: 539)
Name: NF13859_high_2
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 2354494 - 2355014
Alignment:
| Q |
17 |
aattagatctgagaggggctctagttggagcaatcagattctgagcagacattctttggttttccagaaagagtgatttcagtgtcttgtatagaatact |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2354494 |
aattaggtctgagaggggctctagttggagcaatcagattctgagcagacattctttggttttccagaaagagtaatttcagtgtcttgtatagaatact |
2354593 |
T |
|
| Q |
117 |
atcttatatagaagttaacaattgataaaactgcaactaagaatactattttatcaattgataaaattgaaactaaaaatactattttatacaaaagtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354594 |
atcttatatagaagttaacaattgataaaactgcaactaagaatactattttatcaattgataaaattgaaactaaaaatactattttatacaaaagtta |
2354693 |
T |
|
| Q |
217 |
ataacgataaaagaagaaggaattaacatctatccccatcacttgaatcttgattcctttgttattttgtgatcagttgatcttgggacgtaagtaagac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354694 |
ataacgataaaagaagaaggaattaacatctatccccatcacttgaatcttgattcctttgttattttgtgatcagttgatcttgggacgtaagtaagac |
2354793 |
T |
|
| Q |
317 |
tttgggtctctgagaaaccttgaaatcatctctgccttgtcagtagaaagatctgtgttcgccagaattggcccttttgataccttggcaattgcttgga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2354794 |
tttgggtctctgagaaaccttgaaatcatctctgccttgtcagtagaaagatctgtgttctccagaatttgcccttttgataccttggcaattgcttgga |
2354893 |
T |
|
| Q |
417 |
cagaaccaatagcttgactaagctgaattgagtgatcagaaaaacaaaataactcaacctataagcatggctattatacggtttttcatgtaacaaagtt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354894 |
cagaaccaatagcttgactaagctgaattgagtgatcagaaaaacaaaataactcaacctataagcatggctattatacggtttttcatgtaacaaagtt |
2354993 |
T |
|
| Q |
517 |
attattatgtgataaagacta |
537 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2354994 |
attattatgtgataaagacta |
2355014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 2353138 - 2353218
Alignment:
| Q |
24 |
tctgagaggggctctagttggagcaatcagattctgagcagacattctttggttttccagaaagagtgatttcagtgtcttgt |
106 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
2353138 |
tctgagaagggctctagttgtagcaatcagattctgaggagacattctttg--ttgccagaaagagttatttcagtgtcttgt |
2353218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 2353011 - 2353068
Alignment:
| Q |
171 |
caattgataaaattgaaactaaaaatactattttatacaaaagttaataacgataaaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||| |
|
|
| T |
2353011 |
caattgataaaattgaaactaaaaataccattttattcagaagttaacaacaataaaa |
2353068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 2352986 - 2353046
Alignment:
| Q |
110 |
gaatactatcttatatagaagttaacaattgataaaactgcaactaagaatactattttat |
170 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||||| ||||| ||||||| |
|
|
| T |
2352986 |
gaatactatcttataccgaagttaacaattgataaaattgaaactaaaaataccattttat |
2353046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University