View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13859_high_3 (Length: 513)
Name: NF13859_high_3
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 39300306 - 39299908
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggtatatac |
107 |
Q |
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| T |
39300306 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggtatatac |
39300207 |
T |
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| Q |
108 |
aaattttgaagtccatgtaaaattttattttatttaagaaaatgtgaacaagtatctttaggcagaaatgaagaaaatcaatattctcgtgattggcaag |
207 |
Q |
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| T |
39300206 |
aaattttgaagtccatgtaaaattttattttatttaagaaaatgtgaacaagtatctttaggcagaaatgaagaaaatcaatattctcgtgactggcaag |
39300107 |
T |
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| Q |
208 |
tcatttcattttattttaaccctttataagcatttcaattttaagatttgggcacatccctttttcagtgcatgtcccatcaaatattctctcatgattg |
307 |
Q |
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| T |
39300106 |
tcatttcattttattttaaccctttataagcatttcaattttaagatttgggcacatccctttttcagtgcatgtcccatcaaatattctctcatgattg |
39300007 |
T |
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| Q |
308 |
gcaagtcatttacagaatccttgtgtacgtatgaacaagatttttgtaccattggagctttatccaattgaccggggtatgacaggcatgggaagttct |
406 |
Q |
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| T |
39300006 |
gcaagtcatttacagaatccttgtgtacgtatgaacaagatttttgtaccattggagctttatccaattgaccggggtatgacaggcatgggaagttct |
39299908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 39247997 - 39247896
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggtatatac |
107 |
Q |
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| T |
39247997 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggtatatac |
39247898 |
T |
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| Q |
108 |
aa |
109 |
Q |
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|| |
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| T |
39247897 |
aa |
39247896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 407 - 496
Target Start/End: Complemental strand, 39262343 - 39262254
Alignment:
| Q |
407 |
aagcttgtatcggtcttgctcactcaacttgtccccttgttcatgtctcactcaacaaacacaccatataggcagttcttggtctaggac |
496 |
Q |
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| T |
39262343 |
aagcttgtatcggtcttgctcactcaacttgtccccttgttcatgtctcactcaacaaacacaccatatgggcagttcttggtctaggac |
39262254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 39196746 - 39196652
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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| T |
39196746 |
agattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacgatggaaagcttgctccttcatagtaggta |
39196652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 39218318 - 39218224
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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|||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||| || || ||| |||||| |||||| |||||||||||||||| |
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| T |
39218318 |
agattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcgaagactggacgatggaaagcttgctccttcatagtaggta |
39218224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 39225416 - 39225322
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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| T |
39225416 |
agattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcgaagactggacgatggaaagcttgctccttcatagtaggta |
39225322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 39179501 - 39179407
Alignment:
| Q |
8 |
agattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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| T |
39179501 |
agattacactcaggatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggta |
39179407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 39241035 - 39240973
Alignment:
| Q |
40 |
aaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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|||| |||||||||||||||||||| || |||| ||||| ||||||||||||| | ||||||| |
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| T |
39241035 |
aaggcagaccagttttaagatcaaagactggaacatggaaagcttgttccttccttgtaggta |
39240973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 39258465 - 39258403
Alignment:
| Q |
40 |
aaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
102 |
Q |
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| T |
39258465 |
aaggtaaaccggttttaagatcaaagaccggaagatggaaagcttgctcttttatagtaggta |
39258403 |
T |
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