View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13859_high_5 (Length: 386)
Name: NF13859_high_5
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 44423921 - 44424278
Alignment:
| Q |
18 |
aattacagcatatgcatattaaagagtcattatatttgcaagtttataacagaaacaaaagaagaattttatggagatatagtcgtttgagttgcatgct |
117 |
Q |
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| T |
44423921 |
aattacagcatatgcatattaaagagtcattatatttgcaagtttataacagaaacaaatgaagaattttatggagatatagtcgtttgagttgcatgct |
44424020 |
T |
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| Q |
118 |
tcataaattttctatgcctgtaaattgaaagatctggtattgttgtgatttcaggctatctgcatgccagattacagaaagccagagctttactatgatc |
217 |
Q |
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| T |
44424021 |
tcataaattttctatgcctgtaaattgaaagatgtggtattgttgtgatttcaggctatctgcatgccagattacagaaagccagagctttactatgatc |
44424120 |
T |
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| Q |
218 |
tgctaagaagataaaaggatgaatactcagaagcagtagcacattgtttccagctaaagaaaagctttcattgtagtttgtttgacctagtaggannnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
44424121 |
tgctaagaagataaaaggatgaatactcagaagcagtagcacattgtttccagctaaaggaaagctttcattgtagtttgtttgagctagtagga-tttt |
44424219 |
T |
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| Q |
318 |
nnnncccctttaggtggactggatttcatccattattattacaaaacttgatgcctttg |
376 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44424220 |
ttttcccctttaggtggattggatttcatccattattattacaaaacttgatgcctttg |
44424278 |
T |
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