View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13859_low_1 (Length: 726)

Name: NF13859_low_1
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13859_low_1
NF13859_low_1
[»] chr6 (11 HSPs)
chr6 (1-712)||(34770782-34771493)
chr6 (34-238)||(34781161-34781365)
chr6 (523-629)||(34795615-34795721)
chr6 (523-629)||(34780767-34780873)
chr6 (73-142)||(11549487-11549556)
chr6 (630-684)||(34780904-34780958)
chr6 (630-684)||(34795752-34795806)
chr6 (274-342)||(34795285-34795353)
chr6 (4-46)||(11549443-11549485)
chr6 (276-342)||(34780505-34780570)
chr6 (358-452)||(34795418-34795512)


Alignment Details
Target: chr6 (Bit Score: 700; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Original strand, 34770782 - 34771493
Alignment:
Q  1 tgctgaacaaaacagaaatagaataagcaagatgataatgacaactgtggagaataacgtaggtaaggcctgtcgagaaaagaacacactactttttcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34770782 tgctgaacaaaacagaaatagaataagcaagatgataatgacaactgtggagaataacgtaggtgaggcctgtcgagaaaagaacacactactttttcaa 34770881  T
Q  101 ataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770882 ataaaagatcagggataaaatagtaattacaaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattct 34770981  T
Q  201 actatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataaaaagagctaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34770982 actatataatccattttattccattcaatttttacaaaatcctaacttatcaataactactgtgatcttatctataataacaataataaaaagagctaac 34771081  T
Q  301 gaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactctaattctatta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771082 gaagtttgaatcaattgataaaaaataactaaaaattcaactactattgccaacgaaaatacatctttagagagtctcagaagtaactctaattctatta 34771181  T
Q  401 agttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattatttatttacttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771182 agttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattggctatttctttttaataaagtagcattcattcattatttatttacttt 34771281  T
Q  501 tgtttctctaataccattagaaaatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaacca 600  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34771282 tgtttctctaataccattagaaaatgaaagaaagagaatctcgcttcctacttctctctagttttcgtgtctctaattgatctttaccacaacaaaacca 34771381  T
Q  601 agccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttccctctcta 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34771382 agccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttccctctcta 34771481  T
Q  701 tattgttacttc 712  Q
    ||||||||||||    
T  34771482 tattgttacttc 34771493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 34781161 - 34781365
Alignment:
Q  34 gataatgacaactgtggagaa---taacgtaggtaaggcctgtcgagaaaagaacacactactttttcaaataaaa-gatcagggataaaatagtaatta 129  Q
    |||||||||||||||||||||   |||||||  | | ||||||||||||||| ||||||||||| ||||||||||| ||| || |||||||||||||||     
T  34781161 gataatgacaactgtggagaagaataacgtaaatgaagcctgtcgagaaaaggacacactacttgttcaaataaaaagattagagataaaatagtaattt 34781260  T
Q  130 caaaattaagatgtttcatttgagggaatgaaaaataataagagatgatagtatatgatggaatgcattctactatataatccattttattccattcaat 229  Q
     ||||||||||||||||||  |  |||| |||||||||||||||||||| ||||| |||| |||||||| || ||||  |||||||||||||||||||||    
T  34781261 taaaattaagatgtttcat--ggaggaaagaaaaataataagagatgatggtatacgatgaaatgcattatattata--atccattttattccattcaat 34781356  T
Q  230 ttttacaaa 238  Q
    |||||||||    
T  34781357 ttttacaaa 34781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 34795615 - 34795721
Alignment:
Q  523 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 622  Q
    ||||||||| |||||||||| |||||||||||  ||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34795615 aatgaaagaaagagaatctcacttcctacttccctctagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34795714  T
Q  623 tgtcacc 629  Q
    |||||||    
T  34795715 tgtcacc 34795721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 34780767 - 34780873
Alignment:
Q  523 aatgaaagagagagaatctcgcttcctacttctatctagttttcgtgtctctaattgatctttaccacaacaaaaccaagccatgtaaaggttagtttca 622  Q
    ||||||||| |||||||||| |||||||||||  | ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34780767 aatgaaagaaagagaatctcacttcctacttccctttagtactcgtctctctaattgatctttaccacaacaaaaccaaaccatgtaaaggttagtttca 34780866  T
Q  623 tgtcacc 629  Q
    |||||||    
T  34780867 tgtcacc 34780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 11549487 - 11549556
Alignment:
Q  73 tcgagaaaagaacacactactttttcaaataaaagatcagggataaaatagtaattacaaaattaagatg 142  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11549487 tcgagaaaaggacacactactttttcaaataaaagatcagggatagaatagtaattacaaaattaagatg 11549556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 630 - 684
Target Start/End: Original strand, 34780904 - 34780958
Alignment:
Q  630 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 684  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34780904 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34780958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 630 - 684
Target Start/End: Original strand, 34795752 - 34795806
Alignment:
Q  630 atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact 684  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34795752 atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact 34795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 34795285 - 34795353
Alignment:
Q  274 ataataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 342  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  34795285 ataataacaataataaatagagccaacgaagtttgactcaattgataaaaaataacaaaaaatttaact 34795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 11549443 - 11549485
Alignment:
Q  4 tgaacaaaacagaaatagaataagcaagatgataatgacaact 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11549443 tgaacaaaacagaaatagaataagcaagatgataatgacaact 11549485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 34780505 - 34780570
Alignment:
Q  276 aataacaataataaaaagagctaacgaagtttgaatcaattgataaaaaataactaaaaattcaact 342  Q
    |||||||| ||||||||||  || ||||||| || ||||||||||||||||||||||||||||||||    
T  34780505 aataacaaaaataaaaagaatta-cgaagttcgactcaattgataaaaaataactaaaaattcaact 34780570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 34795418 - 34795512
Alignment:
Q  358 aatacatctttagagagtctcagaagtaactctaattctattaagttgcgaaatccgattcatctaaacttctttaggccaaataagtagcattg 452  Q
    ||||| ||||||||||| ||   | ||| |||||| || ||||||||||||||||||| |||| ||||||| |||  ||||||||||||||||||    
T  34795418 aatacctctttagagagactataaggtagctctaactcaattaagttgcgaaatccgactcatttaaacttttttgtgccaaataagtagcattg 34795512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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