View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13859_low_5 (Length: 493)
Name: NF13859_low_5
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 36079957 - 36079475
Alignment:
| Q |
1 |
gctgttccgttttcaacgtcaatatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcat |
100 |
Q |
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| T |
36079957 |
gctgttccgttttcaacgtcaatatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcat |
36079858 |
T |
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| Q |
101 |
ggccaccgcttcggattctaatttgaagatcatattcttttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagagg |
200 |
Q |
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| T |
36079857 |
ggccaccgcttcggattctaatttgaagatcatatttttttgcacatataattgttccttgcacgtgtgacacatgcagggatgttacaattgcaagagg |
36079758 |
T |
|
| Q |
201 |
ttttggtgctgttggtgatgaaaatctgttgttgtatgtgtgcatgtgtaagatggataagaatgaggagttttttggagtgtaaatggcgttggatgca |
300 |
Q |
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| T |
36079757 |
ttttggtgctgttcgtgatgaaaatctgttgttgtatgtgtgcatgtgtaagatggataagaatgaggagttttttggagtgtaaatggcgttggatgca |
36079658 |
T |
|
| Q |
301 |
ggatatgaaggtggagaatggtttgaaagacattggaaaaagttctcaaggggnnnnnnnnnnnnnnnnnnagaagaagaatatgaagttgttccaagaa |
400 |
Q |
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| T |
36079657 |
ggatatgaaggtggagaatggtttgaaagacattggaaaaagttctcaaggggtgatgatgatgatgat---gaagaagaatatgaagttgttccaagaa |
36079561 |
T |
|
| Q |
401 |
cagaaagagaaaatgttagagttgagaggagaaaggacaattttgtgatagtatccatcgtagcgttggtggagagtttgatgatg |
486 |
Q |
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| T |
36079560 |
cagaaagagaaaatgttagagttgagaggagaaaggacaattttgtgatagtatccatcgtagcgttggtggagagtttgatgatg |
36079475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 36107800 - 36107695
Alignment:
| Q |
22 |
atatcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaa |
121 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | || || || || ||||| ||||||| |
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| T |
36107800 |
atatcaactgaattgagatgaaacatgtcaagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaa |
36107701 |
T |
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| Q |
122 |
tttgaa |
127 |
Q |
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| |||| |
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| T |
36107700 |
tctgaa |
36107695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 34971847 - 34971906
Alignment:
| Q |
24 |
atcaactgaatcatgatgaaacatgtcaagtataataaaaggaacatctgatacatatga |
83 |
Q |
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| T |
34971847 |
atcaactgaattgaggtgaaacatgtcaagtacaataaaaggcacatctgataaatatga |
34971906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 6838545 - 6838456
Alignment:
| Q |
38 |
gatgaaacatgtcaagtataataaaaggaacatctgatacatatgaaaggccttcacaatcatggccaccgcttcggattctaatttgaa |
127 |
Q |
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| T |
6838545 |
gatgaaacatgtcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaa |
6838456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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