View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13859_low_6 (Length: 416)
Name: NF13859_low_6
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 59 - 302
Target Start/End: Complemental strand, 22199625 - 22199384
Alignment:
| Q |
59 |
aaatatttttaactgctctttgaattatgattcctgtttacaactaagtcttctttgcaaaagtctacactagcattattgctatttcctttctgatgaa |
158 |
Q |
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| T |
22199625 |
aaatatttttaactgctctttgaattatgattcctcttg-caaccaagtcttctttgcaaaagtctacactagcattattgctatttcctttctgatgaa |
22199527 |
T |
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| Q |
159 |
taatattgttttaattatgcagtctgtaggaagtactgttcatttattactactaataacattccagttattttttaatcatgttataaatgcaaaacat |
258 |
Q |
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| T |
22199526 |
taatattgttttaattatgcagtctgtaggaagtactgttcatttattactactaataacattccagttattttttaatcatgttataaatgcaaaacat |
22199427 |
T |
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| Q |
259 |
cgtcaactttgctatttacttttattttaagggtcatgctaact |
302 |
Q |
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| T |
22199426 |
catcaactttgctatttacttttattttaa-agtcatgctaact |
22199384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22200278 - 22200158
Alignment:
| Q |
1 |
tttaatcatgtacttcttttcagtaacccttgtcatattagcaatgaatttctttgtaaaatatttttaactgctctttgaattatgattcctgtttaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22200278 |
tttaatcatgtacttcttttcagtaacccttgtcataatagcaatgaatttctttgtaaaatatttttaactgctctttgaattatgattcct-cttaca |
22200180 |
T |
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| Q |
101 |
actaagtcttctttgcaaaagt |
122 |
Q |
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| T |
22200179 |
atcaagtcttctttgcaaaagt |
22200158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 22199233 - 22199142
Alignment:
| Q |
310 |
cagggcaccagttagcattttctttattttaattgcaaagaattggatgcaagagttggttgctctgaagcacaaacatagacacagacaca |
401 |
Q |
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||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
22199233 |
cagggcaccgtttaacatttcccttattttaattgcaaagaatttgatgcaagagttgattgctccgaagcacaaacatagacacagacaca |
22199142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 22200158 - 22200130
Alignment:
| Q |
39 |
tagcaatgaatttctttgtaaaatatttt |
67 |
Q |
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| T |
22200158 |
tagcaatgaatttctttgtaaaatatttt |
22200130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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