View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13859_low_8 (Length: 212)
Name: NF13859_low_8
Description: NF13859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13859_low_8 |
 | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
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| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 16676626 - 16676452
Alignment:
| Q |
20 |
ctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16676626 |
ctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgact |
16676527 |
T |
|
| Q |
120 |
aaaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16676526 |
aaaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
16676452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 18164580 - 18164420
Alignment:
| Q |
21 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| | |
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|
| T |
18164580 |
tttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgatatccgacca |
18164481 |
T |
|
| Q |
121 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatc |
181 |
Q |
| |
|
|||||| |||||||||| ||| |||| ||||||||||||| | |||| || |||||||||| |
|
|
| T |
18164480 |
aaactatcattgatgccgtgtctgaacgttaacaatgtctctcgatctttttcattgcatc |
18164420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 19436313 - 19436153
Alignment:
| Q |
27 |
atcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaacta |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||||||| |||||||| |||||||| ||||||||||||| ||||||| |
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|
| T |
19436313 |
atcaagttttgtaactcttccggtaatgttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgatatccgaccaaaacta |
19436214 |
T |
|
| Q |
127 |
ccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| |
|
|
| T |
19436213 |
tcattgatgccttgtttgaaggttaacagtgtctcttgatctttctcattgcatcgaacca |
19436153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 19333415 - 19333257
Alignment:
| Q |
21 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| | |
|
|
| T |
19333415 |
tttgagatcaagttctgtaactcttccggtaatgttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccgacca |
19333316 |
T |
|
| Q |
121 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgca |
179 |
Q |
| |
|
| |||| ||| |||||| ||| |||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
19333315 |
agactatcatggatgccctgtctgaacgttaacaatgtctctcgatctttctcattgca |
19333257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 19350846 - 19350675
Alignment:
| Q |
23 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaa |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||| || ||| |
|
|
| T |
19350846 |
tgagatcaagttttgtaactcttccagtaatattgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatccaaccaaa |
19350747 |
T |
|
| Q |
123 |
actaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
| || |||||||||| ||||| |||||||||||||||| | ||| |||||||||||| ||||||| |||| |
|
|
| T |
19350746 |
attatcattgatgccatgtttaaaggttaacaatgtctctctatctttctcattgcattgaaccaatgtgtg |
19350675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 19413617 - 19413457
Alignment:
| Q |
21 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||||||| || | |
|
|
| T |
19413617 |
tttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatccaacca |
19413518 |
T |
|
| Q |
121 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatc |
181 |
Q |
| |
|
| |||| || |||| || || ||||||||||||| ||||| | |||| ||||||||||||| |
|
|
| T |
19413517 |
agactatcagtgataccctggttgaaggttaacagtgtctctcgatcattctcattgcatc |
19413457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 19460949 - 19460784
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||| |||| |||||||||||| ||||||||| || |
|
|
| T |
19460949 |
ttgagatcaagttttgtaactcttccagtaatgttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaa |
19460850 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
| | ||||||| |||| |||||||||||| | ||||| | |||| ||||||||||||| ||||| |
|
|
| T |
19460849 |
gagtgtcattgattccttatttgaaggttaagagtgtctctcgatctttctcattgcatccaacca |
19460784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 18115381 - 18115217
Alignment:
| Q |
23 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||| ||| |||| |||||||| ||| ||||||||| || |
|
|
| T |
18115381 |
tgagatcaagttttgtaactcttccggtaatgttctcacagtggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaag |
18115282 |
T |
|
| Q |
123 |
actaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
| | ||||||| |||| |||||||||||| | ||||| | |||| ||||||||||||| ||||| |
|
|
| T |
18115281 |
agtgtcattgattccttttttgaaggttaagagtgtctctcgatctttctcattgcatccaacca |
18115217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 18102862 - 18102715
Alignment:
| Q |
40 |
actcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgcctt |
139 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||| ||||| | ||||||| |||||||| ||||| ||||||| ||||||| |||||||||| | |
|
|
| T |
18102862 |
actctcccggtaatgttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttgaaatccgaccaaaactatcattgatgccat |
18102763 |
T |
|
| Q |
140 |
gtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
18102762 |
gtttgaaggttaacagtgtctcatgatctttctcattgcatcgaacca |
18102715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 18146268 - 18146109
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| || ||||||||| ||| |||||||| ||||||||||||||||| ||||| ||||||| || |
|
|
| T |
18146268 |
ttgagatcaagttttgtaactctgtttgtaatattgtcacaaaggactcctttccaaacacaacaatctttttcagttgaccacgttgaaatccgaccaa |
18146169 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatc |
181 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
18146168 |
aactatcattgatgccctttttgaaggttgacagtgtctcatgatctttctcattgcatc |
18146109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 18015516 - 18015342
Alignment:
| Q |
20 |
ctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgact |
119 |
Q |
| |
|
|||||||||||| || | ||||||| || ||||||||||| || |||||||||||||| |||||| |||||||| || ||||| ||||| ||| || |
|
|
| T |
18015516 |
ctttgagatcaatttctataactctaccagtaatgttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcatacc |
18015417 |
T |
|
| Q |
120 |
aaaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||||| | |||| ||||||||||||| ||||||| |||| |
|
|
| T |
18015416 |
aaaactatcattgattccttgtttgaaggttaacagtgtctctcgatctttctcattgcatcgaaccaatgtgtg |
18015342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 18143712 - 18143559
Alignment:
| Q |
28 |
tcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactac |
127 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| | ||||||||||||||| ||||| | |||||||||||||||||||||||| ||| || |||| |
|
|
| T |
18143712 |
tcaagttttgtaactcttctgctaatgttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactat |
18143613 |
T |
|
| Q |
128 |
cattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatc |
181 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | ||| ||||| ||||||| |
|
|
| T |
18143612 |
cattgatgccccatttgaagcttaacaatgtctctcaatctttctcgttgcatc |
18143559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 14896954 - 14897107
Alignment:
| Q |
24 |
gagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaa |
123 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
14896954 |
gagatcaagttttgtaactctttcagtagtgttgtcgcagtggactccttcccaagcacaacaatctttttc---ggaccatattgatatccgaccaaaa |
14897050 |
T |
|
| Q |
124 |
ctaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcat |
180 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
14897051 |
gtatcatggatgccttgtttgaagtttaacaatatctcacgatctttctcattgcat |
14897107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 19392575 - 19392421
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| || ||||| |||||||| ||||||| ||||||| |||| ||| |||||||||||| || |
|
|
| T |
19392575 |
ttgagatcaagttttgtaactcttcaggtagtgttgtcacaatggacaccttcccaagcacaacaatctttttttgttgtccacattgatatccgaccaa |
19392476 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcatt |
176 |
Q |
| |
|
| || |||||||||||||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
19392475 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcatt |
19392421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 24493994 - 24494152
Alignment:
| Q |
36 |
tgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatg |
135 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| |||| ||||||| |||||| | |||||||||||||| ||| ||| || |||| ||| |||| |
|
|
| T |
24493994 |
tgtaactctgccagtaatgttgtcacattggactcctttccatgcacaacaatcttttacggttgaccatgttgaaatcagaccaagactatcatcgatg |
24494093 |
T |
|
| Q |
136 |
ccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
| ||||||||||| ||||| ||||| | |||| |||||||||||| ||||||| |||| |
|
|
| T |
24494094 |
ctttgtttgaaggctaacagtgtctctcgatctttctcattgcatgaaaccaatgtgtg |
24494152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 17728262 - 17728435
Alignment:
| Q |
21 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
120 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| || ||||| |||||||| ||||||| | || || |||| |||| | |||||||||| | |
|
|
| T |
17728262 |
tttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaaca |
17728361 |
T |
|
| Q |
121 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
| ||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||||| |||| |
|
|
| T |
17728362 |
gagctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtg |
17728435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 19029491 - 19029664
Alignment:
| Q |
21 |
tttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgacta |
120 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| || ||||| |||||||| ||||||| | || || |||| |||| | |||||||||| | |
|
|
| T |
19029491 |
tttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaaca |
19029590 |
T |
|
| Q |
121 |
aaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
| ||| ||||||||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||||| |||| |
|
|
| T |
19029591 |
gagctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtg |
19029664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 19419395 - 19419244
Alignment:
| Q |
36 |
tgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatg |
135 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| | |||||| |||| | | | |||| |||| ||||||| |
|
|
| T |
19419395 |
tgtaactcttccggtaatgttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattgatg |
19419296 |
T |
|
| Q |
136 |
ccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
|| |||||||||||||| | | ||| | |||| ||||||||||||| ||||| |
|
|
| T |
19419295 |
ccctgtttgaaggttaagagtatctctagatctttctcattgcatcgaacca |
19419244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 19399134 - 19399002
Alignment:
| Q |
49 |
gtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaagg |
148 |
Q |
| |
|
||||||||||| || | |||||||||||| | ||||| ||||||| |||||||| ||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
19399134 |
gtaatgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagt |
19399035 |
T |
|
| Q |
149 |
ttaacaatgtcttttgatccttctcattgcatc |
181 |
Q |
| |
|
|||||| ||||| | |||| ||||||||||||| |
|
|
| T |
19399034 |
ttaacagtgtctctcgatctttctcattgcatc |
19399002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 18107865 - 18107701
Alignment:
| Q |
23 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaa |
122 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||| || |||||| |||||||||||||||| |||||||| |||||||| |||| | | |||| |
|
|
| T |
18107865 |
tgagatcaatttctgtaactcttccgataatgttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaag |
18107766 |
T |
|
| Q |
123 |
actaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | | | | | |||| ||||||||||||| ||||| |
|
|
| T |
18107765 |
actattattgatgccatgtttgaaggttaagagtatatctagatctttctcattgcatcgaacca |
18107701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 19380319 - 19380154
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| || ||||| |||| ||| ||||||| || |||||||||||||| ||||| ||| || || |
|
|
| T |
19380319 |
ttgagatcaatttttgtaactcttctggtaatgttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtaccaa |
19380220 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
|||| ||||||| || ||||| |||||||| | | ||| | |||| |||||||| |||| ||||| |
|
|
| T |
19380219 |
gactatcattgattccctgtttaaaggttaagagtatctctagatctttctcattacatcgaacca |
19380154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 17941182 - 17941024
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||| || ||||||||||||| ||||||| || |||| |||||||| |||||||| |||| || |
|
|
| T |
17941182 |
ttgagatcaacttttgtaactctgtttgtaatattgtcacaaaggactccttcccaagcacaacaatcatttttggttgaccacgttgatattcgaccaa |
17941083 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcat |
180 |
Q |
| |
|
|||| |||||||||| |||||||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
17941082 |
gactatcattgatgccatgtttgaaggttaatagtgtctcgcgatctttctcattgcat |
17941024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 19375113 - 19374939
Alignment:
| Q |
20 |
ctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgact |
119 |
Q |
| |
|
|||||||||||| || ||||||||| | ||||||||||| || | |||||||||||| |||||| ||||||||| | ||||| | ||| ||| || |
|
|
| T |
19375113 |
ctttgagatcaatttctgtaactctactagtaatgttgtcacagtagactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcatacc |
19375014 |
T |
|
| Q |
120 |
aaaactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
||||||| ||||||| || | |||||||||||| | ||||| | |||| ||||||||||||| ||||||| |||| |
|
|
| T |
19375013 |
aaaactatcattgattccctctttgaaggttaatagtgtctctcgatctttctcattgcatcgaaccaatgtgtg |
19374939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 25462486 - 25462326
Alignment:
| Q |
24 |
gagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaa |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||| ||||||||| ||||||| ||||||||| ||||| |||| ||| || || | |
|
|
| T |
25462486 |
gagatcaagttttgtaactcgtccggtaatgttgtcacagacgacaccttcccatgcacaacaatctttttca---gaccacattgaaatcataccaaga |
25462390 |
T |
|
| Q |
124 |
ctaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
|| |||||||||| |||||||||||||||| ||||| | || ||||||||||||| ||||| |
|
|
| T |
25462389 |
ctgtcattgatgccatgtttgaaggttaacagtgtctcacggtctttctcattgcatcgaacca |
25462326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 19354250 - 19354112
Alignment:
| Q |
49 |
gtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaagg |
148 |
Q |
| |
|
||||| ||||| || |||||| ||||||| |||||| ||||||||||| ||||| |||| ||| || || |||| ||||||| || ||||| |||| |
|
|
| T |
19354250 |
gtaatattgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaaagg |
19354151 |
T |
|
| Q |
149 |
ttaacaatgtcttttgatccttctcattgcatctaacca |
187 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||| ||||| |
|
|
| T |
19354150 |
ttaacaatgtctctcgatctttctcattgcatcgaacca |
19354112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 536 - 657
Alignment:
| Q |
66 |
gactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaaggttaacaatgtcttttga |
165 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||| |||||||||| || || |||| |||||||| | |||||||||||||||||||||| || |
|
|
| T |
536 |
gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga |
635 |
T |
|
| Q |
166 |
tccttctcattgcatctaacca |
187 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
636 |
tctttctcattgcatctaacca |
657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 4794 - 4673
Alignment:
| Q |
66 |
gactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaaggttaacaatgtcttttga |
165 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||| |||||||||| || || |||| |||||||| | |||||||||||||||||||||| || |
|
|
| T |
4794 |
gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga |
4695 |
T |
|
| Q |
166 |
tccttctcattgcatctaacca |
187 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
4694 |
tctttctcattgcatctaacca |
4673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 13667466 - 13667635
Alignment:
| Q |
25 |
agatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaac |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||| |||||||| ||||||||||||| || | |
|
|
| T |
13667466 |
agattaagttttgtaactcttccggtaatgttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagag |
13667565 |
T |
|
| Q |
125 |
taccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtg |
194 |
Q |
| |
|
| |||||| || |||||||||||||| | ||||| | |||| |||||||||||| ||||||| |||| |
|
|
| T |
13667566 |
tgtcattgactccctgtttgaaggttaagagtgtctctcgatctttctcattgcattgaaccaatgtgtg |
13667635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 15531800 - 15531647
Alignment:
| Q |
23 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaa |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||||| | ||||||| | ||||| |||| ||||||| ||| |
|
|
| T |
15531800 |
tgaggtcaagttttgtaactcttccggtcatgttgtcacaatggactcctccccaagcacaacaatttttttcaatagaccacattgaaatccgaccaaa |
15531701 |
T |
|
| Q |
123 |
actaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcatt |
176 |
Q |
| |
|
|||| |||||| || |||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
15531700 |
actatcattgacaccctgtttgaaggttaacagtgtctctcgatctttctcatt |
15531647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 8458923 - 8458765
Alignment:
| Q |
22 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
121 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| || |||||||||| ||| ||||||| ||||||||||||||||| |||||||| || | |
|
|
| T |
8458923 |
ttgagatcaagttttgtaactctgccagtaatgctgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgatattataccac |
8458824 |
T |
|
| Q |
122 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcat |
180 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||| ||| | | | || |||||||||||| |
|
|
| T |
8458823 |
gactatcattgaggccctgtttgaaggttaacattgtttgtcggtcattctcattgcat |
8458765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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