View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1385_low_1 (Length: 529)
Name: NF1385_low_1
Description: NF1385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1385_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 361 - 524
Target Start/End: Original strand, 2316153 - 2316316
Alignment:
| Q |
361 |
cattcaaaggagtggattggaaagtcgttggcggtgagatgcagcaaaaccctaatgtcaaaccaactattgcaaaacgactcctcaagaaagttaggaa |
460 |
Q |
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| T |
2316153 |
cattcaaaggagtggattggaaagccgttggcggtgagatgcagcaaaaccctaatgtcaaaccaactattgcaaaacgactccccaagaaagttaggaa |
2316252 |
T |
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| Q |
461 |
cataccagaccactatttccttcccatatatccattatcacacactttgttgttctgtggtgct |
524 |
Q |
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| T |
2316253 |
cataccagaccactatttccttcccagatatccattatcacacactttgttgttctgtggtgct |
2316316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 361 - 523
Target Start/End: Original strand, 47827612 - 47827774
Alignment:
| Q |
361 |
cattcaaaggagtggattggaaagtcgttggcggtgagatgcagcaaaaccctaatgtcaaaccaactattgcaaaacgactcctcaagaaagttaggaa |
460 |
Q |
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| T |
47827612 |
cattcaaaggagtggattggaaagccgttggcggtgagatgcagcaaaaccctaatgtcaaaccaactattgcaaaacgactccccaagaaagttaggaa |
47827711 |
T |
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| Q |
461 |
cataccagaccactatttccttcccatatatccattatcacacactttgttgttctgtggtgc |
523 |
Q |
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| T |
47827712 |
cataccagaccactatttccttcccagatatccattatcacacactttgttgttctgtggtgc |
47827774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 47811268 - 47811373
Alignment:
| Q |
84 |
gagacaaagagagaaaaggagttttaagggtgaaatattagttagggttagagaagcttgtgtttctgatgctgaagctgctaccattgttgctgaagtt |
183 |
Q |
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| T |
47811268 |
gagacaaagagagaaaaggagttttaagggtgaaatattagttagggttagagaagcttgtgtttctgatgctgaagctgctaccattgttgctgaagtt |
47811367 |
T |
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| Q |
184 |
ttgtgg |
189 |
Q |
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|||||| |
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| T |
47811368 |
ttgtgg |
47811373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 47811452 - 47811543
Alignment:
| Q |
236 |
ttattattagttcttaattttgtagttcaactatgagactaatctgaatgtgaattcttttcctttccacaaaagagtcatgttatcaattt |
327 |
Q |
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| T |
47811452 |
ttattattagttcttaattttgtagttcaactatgagactaatctgaatgtgaattcttttcctttccacaaaagagtcatgttatcaattt |
47811543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 47811646 - 47811682
Alignment:
| Q |
326 |
ttttctcttgtttttggtttgtttcacataggttgca |
362 |
Q |
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| T |
47811646 |
ttttctcttgtttttggtttgtttcacgtaggttgca |
47811682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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