View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1385_low_3 (Length: 260)
Name: NF1385_low_3
Description: NF1385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1385_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 25117104 - 25116877
Alignment:
| Q |
23 |
aatatatgagatagcaatttgaagtatatttgcttcgtttgttccaaaatgcatgtcatacaaatgctacctaaagataaagcgacgcaaaagaaatata |
122 |
Q |
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| T |
25117104 |
aatatatgagatagcaatttgaagtatatttgcttcgtttgttcaaatatgcatgtcatacaa-tgctacctaaagataaagcgacgcaaaaaaaatata |
25117006 |
T |
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| Q |
123 |
acataaaatcatattaacttacttttatttaagacatcagcaaataatccttctgcacaacaacacttgattagaaatgataataaagggagaaaaaatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||||||| |
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| T |
25117005 |
acataaaatcatattaacttacttttatttaagacatgaccaaataatccttctgcataacaacactttattagaaataacaataaagggagaaaaaatt |
25116906 |
T |
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| Q |
223 |
cgactttgtattgatgtgaaaattggttg |
251 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
25116905 |
agactttatattgatgtgaaaattggttg |
25116877 |
T |
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