View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1385_low_4 (Length: 252)
Name: NF1385_low_4
Description: NF1385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1385_low_4 |
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| [»] scaffold0366 (2 HSPs) |
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| [»] scaffold0459 (2 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 8728 - 8886
Alignment:
| Q |
94 |
agttctaaatcacggtctgcaattgcattgtggcggcagtgtagaggttttaaacgtctctacaacggcaactgtggccgtatcaactgcatttgccaac |
193 |
Q |
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| T |
8728 |
agttctaaatcacggtctgcaattgcattgtggcggcagtgtagaggttttaaacgtctctacaacggcaactgtggccgtatcaactgcatttgccaac |
8827 |
T |
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| Q |
194 |
gtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcat |
252 |
Q |
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| T |
8828 |
gtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcat |
8886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 8644 - 8677
Alignment:
| Q |
10 |
aagaatatatacatagtcggtgccaatatcctgt |
43 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
8644 |
aagaaaatatacatagtcggtgccaatatcctgt |
8677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 8804 - 8962
Alignment:
| Q |
94 |
agttctaaatcacggtctgcaattgcattgtggcggcagtgtagaggttttaaacgtctctacaacggcaactgtggccgtatcaactgcatttgccaac |
193 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8804 |
agttctaaatcacggtctgcaattgcattgtggcgacagtgtagaggttttaaatgtctctacaacggcaactgtggccgtatcaactgcatttgccaac |
8903 |
T |
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| Q |
194 |
gtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcat |
252 |
Q |
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| T |
8904 |
gtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcat |
8962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 8720 - 8753
Alignment:
| Q |
10 |
aagaatatatacatagtcggtgccaatatcctgt |
43 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
8720 |
aagaaaatatacatagtcggtgccaatatcctgt |
8753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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