View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1386-INSERTION-2 (Length: 726)
Name: NF1386-INSERTION-2
Description: NF1386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1386-INSERTION-2 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 277 - 715
Target Start/End: Original strand, 506621 - 507060
Alignment:
| Q |
277 |
aaaaagatctattggtctctttttgagaatgacacatgggttcgtttaaatggaaagtgcagccgaaagttgaaagaaaaggacaatctaactcataaat |
376 |
Q |
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| T |
506621 |
aaaaagatctattggtctctttttgagaatgacacatgggttcgtttaaatggaaagtgcagccgaaagttgaaagaaaaggacaatctaactcataaat |
506720 |
T |
|
| Q |
377 |
gtgtctaaacttgaaccaaagtataatggtccagttaaaaataataataaatataaagggaaaatttctttttcggcatctatcaatttttcacaagcac |
476 |
Q |
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| T |
506721 |
gtgtctaagcttgaaccaaagtataatggtccagttaaaaataataataaatataaagggaaaatttctttttcggcatctatcaatttttcacaagcac |
506820 |
T |
|
| Q |
477 |
ctagcaaaatggctcctacggtagttaactattgttcgctttgaacgatacttaactcccgtttcgatggaatttataccggaaaagctgaaaaactaaa |
576 |
Q |
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| T |
506821 |
ctagcaaaatggctcctacggtagttaactattgttcgctttgaaccatacttaactcccgttctgatggaatttataccgaaaaaactgaaaaactaaa |
506920 |
T |
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| Q |
577 |
caaaagacattatatatatggaaacatctgatcaatatttaactattattcaagagcgaacggtagataactatatttgggaacattttcta--tttttt |
674 |
Q |
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| T |
506921 |
caaaagacattatgtatatagaaacatctgatcaatatttaactattgttcaagagcgaacggtagataactatatttggg-acattttttatttttttt |
507019 |
T |
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| Q |
675 |
aaggtgtttgtgagcaactgctacatgcctaaagagcaatt |
715 |
Q |
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| T |
507020 |
aaggtgtttgtgagcaactgctgcatgcctgaagagcaatt |
507060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 506448 - 506617
Alignment:
| Q |
47 |
agaatgttcaatttcacttattaatatgtgcgcccccttttttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctgatg |
146 |
Q |
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| T |
506448 |
agaatgttcaatttcaattattaatatgtgcgcccccttttttctggtttttggtggtttatttgattggggtgtttcgcctatatacggcaccctgatg |
506547 |
T |
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| Q |
147 |
tttttgtattgttgtttttattggcctttgcgcttcctaagcaggttatgcgtaataaattttgctgttt |
216 |
Q |
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| T |
506548 |
tttttgtattgttgtttttattggcctttgcgcttcctaagcaggttatgcgtaataaattttgctgttt |
506617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 5179622 - 5179765
Alignment:
| Q |
70 |
atatgtgcgcccccttt-tttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctgat-gtttttgtattgttgtttttat |
167 |
Q |
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| T |
5179622 |
atatttgcgcccccattgtttatggtttttgttggttttatgg-ttggggtgttccgcctatatacggcaccctgtttgattttgtactgttgtttttgc |
5179720 |
T |
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| Q |
168 |
tggcctttgcgcttcctaagcaggttatgcgtaataaattttgct |
212 |
Q |
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| T |
5179721 |
tggcctttgcgcttcctttgaaggttatgtgtaatgaattttgct |
5179765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 3595067 - 3595176
Alignment:
| Q |
73 |
tgtgcgcccccttttttctggtttttggtggtttaattgattggggtgtttcgcctgtatacggcaccctg-atgtttttgtattgttgtttttattggc |
171 |
Q |
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||||| |||| ||||||||||||||||||||||| || | ||||||||| ||||| || | ||||||||| ||||||| ||||||||||||| |||| |
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| T |
3595067 |
tgtgccccccattttttctggtttttggtggttttatag-ttggggtgtgccgcctatagaaggcaccctgtttgtttttatattgttgtttttgctggc |
3595165 |
T |
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| Q |
172 |
ctttgcgcttc |
182 |
Q |
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| T |
3595166 |
ctttgcgcttc |
3595176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 719
Target Start/End: Original strand, 37955247 - 37955295
Alignment:
| Q |
671 |
ttttaaggtgtttgtgagcaactgctacatgcctaaagagcaatttccc |
719 |
Q |
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| T |
37955247 |
ttttaaggtgcttgtgagcaaatgctagatgcttaaagagcaatttccc |
37955295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 23352985 - 23353079
Alignment:
| Q |
113 |
ttggggtgtttcgcctgtatacggcaccc--tgatgtttttgtattgttgtttttattggcctttgcgcttcctaagcaggttatgcgtaataaa |
205 |
Q |
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|||||||||| ||||| |||||||||||| | ||||||| ||||||||||||| ||||||||||||||| | |||||| ||| |||||||| |
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| T |
23352985 |
ttggggtgttccgcctatatacggcacccgattttgtttttctattgttgtttttgatggcctttgcgcttcttgtgcaggtcatgagtaataaa |
23353079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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