View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_high_11 (Length: 484)
Name: NF13860_high_11
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 12945830 - 12946275
Alignment:
| Q |
17 |
catcagagttgagtttgattttgaggaattcatagggatccatagtggagttttgtttggaattaggtgaatttggttatgccattgttgttgaaatgag |
116 |
Q |
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| T |
12945830 |
catcagagttgagtttgattttgaggaattcatagggatccatagtggagttttgtttggaattaggtgaatttggttatgccattgttgttgaaatgag |
12945929 |
T |
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| Q |
117 |
aagagataaaaggttaattcagagtcaatgatgcaacatggaattgttgtacggttaactactttcagagtggtcctt-aatttctctacgtttggcttt |
215 |
Q |
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| T |
12945930 |
aagagataaaaggttaattcagagtcaatgatgcaacatggaattgttgtacggttaactactttgagagt-gtccttaaatttctctacgtttggcttt |
12946028 |
T |
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| Q |
216 |
cattcatgcttgttaattgtgaccacactttggcatagatattttgcacgcagtaatgtgtggtgatattttatttttgacnnnnnnnncttgtgccaat |
315 |
Q |
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| T |
12946029 |
cattcatgcttgttaattgtgaccacactttggcatagatattttgcacgcagtaatgtgtggtgatattttattttcgacaaaacaaacttggggcaat |
12946128 |
T |
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| Q |
316 |
ttgtggtgattattaaaggtaataca-tggagaaaatcatatatttatggtcacaatcacaaatcaatagcatttacgaactctcacgatatgctctgtt |
414 |
Q |
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| T |
12946129 |
ttgtggtgattattaaaggtaatacattggagaaaatcatatatttatggtcacaatcacaaatcaatatcatttactaactctcacgatatgctatgtt |
12946228 |
T |
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| Q |
415 |
gtagttaataaatcacgcaactacacatcggtgttcggtcaagatcg |
461 |
Q |
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| T |
12946229 |
gcggttaataaatcacgcaactacacatcggtgttcgatcaagatcg |
12946275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 12938146 - 12938207
Alignment:
| Q |
17 |
catcagagttgagtttgattttgaggaattcatagggatccatagtggagttttgtttggaa |
78 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| || ||||||||| |||||||| |
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| T |
12938146 |
catcagggttgagtttgatttcgaggaattcatagggatcgatggtggagtttggtttggaa |
12938207 |
T |
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