View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_high_14 (Length: 453)
Name: NF13860_high_14
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 46649090 - 46648950
Alignment:
| Q |
307 |
atcctgaaccttcaaccgcgaaaaactgccatttctgtcaggataaccgatcagaaagaacaaccggttaaatttgtaaatttctgaggaatacattact |
406 |
Q |
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| T |
46649090 |
atcctgaaccttcaaccgcgaaaaactgccatttctgacaggataaccaatcagaaagaacaactg-ttaaatttgtaaatttctgaggaatacattact |
46648992 |
T |
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| Q |
407 |
cgagaacgtttgggcgcgatgataaccaatccctttgcttct |
448 |
Q |
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| T |
46648991 |
agagaacgtttgggcgcaatgataaccaatccctttggttct |
46648950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 46651164 - 46651057
Alignment:
| Q |
203 |
tctgcacctaatgacgatgaagtggtcattctgaccaaagaaaaatatgaatggttgttgcagagg-ttgaccaggctgataagcttgaagggaagattt |
301 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46651164 |
tctgcacctaatgacgatgaagtggtcattatgaccaaagaaaaatatgaatggttgttgcagaggcttgaccaggctgataagcttgaagggaagattt |
46651065 |
T |
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| Q |
302 |
tacaaatc |
309 |
Q |
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|||||||| |
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| T |
46651064 |
tacaaatc |
46651057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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