View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_high_20 (Length: 390)

Name: NF13860_high_20
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_high_20
NF13860_high_20
[»] chr3 (13 HSPs)
chr3 (177-372)||(6948327-6948528)
chr3 (55-376)||(8590777-8591080)
chr3 (212-372)||(6553253-6553415)
chr3 (297-372)||(6737042-6737117)
chr3 (297-379)||(6519064-6519146)
chr3 (299-376)||(6478886-6478963)
chr3 (299-376)||(8455702-8455779)
chr3 (132-212)||(6478023-6478111)
chr3 (137-204)||(6478709-6478774)
chr3 (132-173)||(6737846-6737887)
chr3 (137-204)||(6518889-6518954)
chr3 (132-173)||(6518259-6518300)
chr3 (223-256)||(8455813-8455846)
[»] scaffold0425 (1 HSPs)
scaffold0425 (212-372)||(6292-6454)
[»] chr4 (1 HSPs)
chr4 (286-336)||(41068269-41068320)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 372
Target Start/End: Complemental strand, 6948528 - 6948327
Alignment:
Q  177 aaatcaaaacgagagatattcatatattattat---gcat--atataattcttgtttcatttaattttacttgactgaaagaacacaattaccttgcaga 271  Q
    ||||||||||||||||||||| |||||||||||   ||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  6948528 aaatcaaaacgagagatattcttatattattattatgcatgtatataattcttgtttcatttaattttacttgacagaaagaacacatttatcttgcaga 6948429  T
Q  272 ggtttcaagacttgtgcttcaggct-aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggct 370  Q
    || || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  6948428 ggctttaagacttgtgcttcaggctcaatatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgattattgagaagttggct 6948329  T
Q  371 tc 372  Q
    ||    
T  6948328 tc 6948327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 55 - 376
Target Start/End: Complemental strand, 8591080 - 8590777
Alignment:
Q  55 ataatgaactcttgcatattctcaccaataataatgatcccctcnnnnnnnnnctttcttccttccttttaataagaagcattgtatgagagtggttgtt 154  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||          ||| ||| |||  |||||| |||| ||||||||||||||| |||||    
T  8591080 ataatcaactcttgcatattctcaccaataataatgatcacctctt--------ttttttctttc--tttaattagaatcattgtatgagagtgattgtt 8590991  T
Q  155 gcgtggggatgtaacaagagagaaatcaaaacgagagatattcatatattattatgcata--tataattcttgtttcatttaattttacttgactgaaag 252  Q
    || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| |||||    
T  8590990 gcatgaggatgtaacaagagagaaatcaaaacgagagatattcatctattattatgcatatatataattcttgtttcatttaattttatttgacagaaag 8590891  T
Q  253 aacacaatt--accttgcagaggtttcaagacttgtgcttcaggctaatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaag 350  Q
    || ||| ||  |  |||||||||  | ||||||             | |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  8590890 aatacatttccattttgcagaggcattaagact------------cattatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaag 8590803  T
Q  351 tgataattgagaagttggcttcggtt 376  Q
    |||| |||||||||||||||||||||    
T  8590802 tgattattgagaagttggcttcggtt 8590777  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 6553253 - 6553415
Alignment:
Q  212 atatataattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatgg 308  Q
    |||| ||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||    
T  6553253 atatttaattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatgg 6553351  T
Q  309 cagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 372  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6553352 cagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6553415  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 6737117 - 6737042
Alignment:
Q  297 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 372  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6737117 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6737042  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 6519064 - 6519146
Alignment:
Q  297 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcat 379  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| || ||||||    
T  6519064 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcgtctgttcat 6519146  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 6478886 - 6478963
Alignment:
Q  299 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggtt 376  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||    
T  6478886 tatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgatttttgagaagttggcttcggtt 6478963  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 8455779 - 8455702
Alignment:
Q  299 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggtt 376  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| || |||||||| |||||||||    
T  8455779 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaattgattatcgagaagttagcttcggtt 8455702  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 6478023 - 6478111
Alignment:
Q  132 agcattgtatgagagtggttgttgcgtggggatgtaacaag--------agagaaatcaaaacgagagatattcatatattattatgca 212  Q
    |||||||||||||||||||| ||||||||||||||||||||        |||||||||||||| ||||| |||||||| ||||||||||    
T  6478023 agcattgtatgagagtggttcttgcgtggggatgtaacaagattacaacagagaaatcaaaacaagagaaattcatattttattatgca 6478111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 6478709 - 6478774
Alignment:
Q  137 tgtatgagagtggttgttgcgtggggatgtaacaagagagaaatcaaaacgagagatattcatatatt 204  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||||||||||| |||||||||||||||    
T  6478709 tgtacgagagtggttcttgcgtgggaatgtaac--gagagaaatcaaaacgaaagatattcatatatt 6478774  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 6737887 - 6737846
Alignment:
Q  132 agcattgtatgagagtggttgttgcgtggggatgtaacaaga 173  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  6737887 agcattgtatgagagtggttcttgcgtggggatgtaacaaga 6737846  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 6518889 - 6518954
Alignment:
Q  137 tgtatgagagtggttgttgcgtggggatgtaacaagagagaaatcaaaacgagagatattcatatatt 204  Q
    |||| |||||||||| ||||||||| |||||||  |||||||||||||| || |||||||||||||||    
T  6518889 tgtacgagagtggttattgcgtgggaatgtaac--gagagaaatcaaaatgaaagatattcatatatt 6518954  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 6518259 - 6518300
Alignment:
Q  132 agcattgtatgagagtggttgttgcgtggggatgtaacaaga 173  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  6518259 agcattgtatgatagtggttcttgcgtggggatgtaacaaga 6518300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 8455846 - 8455813
Alignment:
Q  223 ttgtttcatttaattttacttgactgaaagaaca 256  Q
    |||||||||||||||||||||||| |||||||||    
T  8455846 ttgtttcatttaattttacttgacagaaagaaca 8455813  T

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Target: scaffold0425 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 6292 - 6454
Alignment:
Q  212 atatataattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatgg 308  Q
    |||||||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||    
T  6292 atatataattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatgg 6390  T
Q  309 cagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 372  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6391 cagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6454  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 41068269 - 41068320
Alignment:
Q  286 tgcttcaggct-aatatatcatggcagaattggtagctggggcatttcttca 336  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  41068269 tgcttcaggctcaatgtatcatggcagagttggtagctggggcatttcttca 41068320  T

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