View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_high_25 (Length: 328)

Name: NF13860_high_25
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_high_25
NF13860_high_25
[»] chr5 (1 HSPs)
chr5 (20-311)||(6417369-6417660)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 6417660 - 6417369
Alignment:
Q  20 agttgattgaatgtggtatgcataattggggtaagataaaacaaatgtctgtggagagtaacggtctaagaatttatttgggaaaatgaaaaacgtgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6417660 agttgattgaatgtggtatgcataattggggtaagataaaacaaatgtctgtggagagtaacggtctaagaatttatttgggaaaatgaaaaacgtgtaa 6417561  T
Q  120 ttatttttggagacatatactggcctacgttttaaataaacactatccaaaagtcctaatattgtgaagggccnnnnnnngagccagtacttgctctgtg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  6417560 ttatttttggagacatatactggcctacgttttaaataaacactatccaaaagtcctaatattgtgaagggcctttttttgagccagtacttgctctgtg 6417461  T
Q  220 atataagttaaaatagggcaagtcacgcttgttgaatagtatattcattaattagtatatcgagactttctttgggttgcaccaattgagtg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6417460 atataagttaaaatagggcaagtcacgcttgttgaatagtatattcattaattagtatatcgagactttctttgggttgcaccaattgagtg 6417369  T

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