View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13860_high_26 (Length: 324)
Name: NF13860_high_26
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 37816688 - 37816986
Alignment:
| Q |
14 |
agggtaatgttaggaatgcattttaatttttagcaatttcattttaaaatcactcatttatta---atgagcgaaattcacgtggaatctaccattttaa |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37816688 |
agggtaatgttaagaatgcattttaatttttagcaatttcattttaaaatcactcatttattattaatgagcgaaattcacgtggaatctaccattttaa |
37816787 |
T |
|
| Q |
111 |
aaatagatttcacaccctcctacaaaatattcactcatgtctcatttatattaacattttcactttcatcagaatttaaactcagatcctcgtacaaaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37816788 |
aaatagatttcacaccctcctacaaaatattcactca-------tttatattaacattttcactttcatcagaatttgaactcagatcctcgtacaaaat |
37816880 |
T |
|
| Q |
211 |
atacacattaattacattatcaattttaatatattttacataaactctcaacattggtgataatcctattcgaagtatttgttnnnnnnntctttttcga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37816881 |
atacacattaattacattatcaattttaatatattttacataaactctcaacattggtgataatcctattcgaagtatttgttaaaaaaatctttttcga |
37816980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University