View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_high_29 (Length: 289)
Name: NF13860_high_29
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 45530874 - 45530589
Alignment:
| Q |
1 |
ctacatgttaatcctttaactacacaactaaataaaaaatatgctttcagaaaggaaaataaaaacagattccaaacttcattcaacttgcttctgctct |
100 |
Q |
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| T |
45530874 |
ctacatgttaatcctttaactacacaactaaataaaaaatatgctttcagaaaggaaaataaaaacagattccaaacttcattcaacttgcttctgctat |
45530775 |
T |
|
| Q |
101 |
ctgtcaagcaatatcccaaggcttttgaatcaacaaagaactagttcagactagcaacggttatatatcaatatcgtttaccaaactatagctatttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45530774 |
ctgtcaagcaatatcccaaggcttttgaatcaacaaagaactagttcagactagcaacggttatatatcaatatcgtttaccaaactatagctatttcaa |
45530675 |
T |
|
| Q |
201 |
caagnnnnnnncattattaagagtaaaaaggagtttcataagagcaatagttatgttgtgttacaagagcaactgatcaagcaatg |
286 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45530674 |
caagaaaaaaacattattaagagtaaaaaggagtttcataagagcaatagttatgttgtgttacacgagcaactgatcaagcaatg |
45530589 |
T |
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