View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_high_6 (Length: 536)
Name: NF13860_high_6
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Complemental strand, 28893987 - 28893467
Alignment:
| Q |
17 |
attacctacgtgtggcgctggacacggtggctccatctgctgctttacctccatttggtgcaattgaagaggtgtgttgtctattctctcacactttttc |
116 |
Q |
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| T |
28893987 |
attacctacgcgtggcgctggacacggtggctccatctgctgctttacctccatttggtgcaattgaagaggtgtgttgtctattctctcacactttttc |
28893888 |
T |
|
| Q |
117 |
atcattttgttgcttcatatgtctaattgagactgaaattgaactgaatatttgtgcatgtgtatttgtttttgcagatggataaggtaattggtgaagt |
216 |
Q |
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| T |
28893887 |
atcattttgttgcttcatatgtctaattgagactgaaattgaattgaatatttgtgcatgtgtatttgtttttgcagatggataaggtaattggtgaagt |
28893788 |
T |
|
| Q |
217 |
gttcaagttggtgagtgcagatgatgcaaagttggtgaaagaagaagaattcaagaaaatattaactgaaatattggggagtatcatgttgcagttggaa |
316 |
Q |
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| T |
28893787 |
gttcaagttggtgagtgcagatgatgcaaagttggtgaaagaagaagaattcaagaaaatattaactgaaatattggggagtatcatgttgcagttggaa |
28893688 |
T |
|
| Q |
317 |
ggaaatcctatagcagttgcttcaaattctgtagtgcatgagcctctaggctcctcttctacacttctgcagccaacccctgctgaaacagcataattca |
416 |
Q |
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| T |
28893687 |
ggaaatcctatagcagttgcttcaaattctgtagtgcatgagcctctaggctcctcttctacacttctgcagccaacccctgctgaaacagcataattca |
28893588 |
T |
|
| Q |
417 |
tcatagctgtgtagatctaagtatgtat------------gtatatgatgatggataaaattaagaaccagtaactataataaaatatttatttctgtaa |
504 |
Q |
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| T |
28893587 |
tcatagctgtgtagatctaagtatgtatgtatgtatgtatgtatatgatgatggataaaattaagaaccagtaactataataaaatatttatttgtgtaa |
28893488 |
T |
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| Q |
505 |
attatgtattagtactagtat |
525 |
Q |
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| T |
28893487 |
attatgtattagtactagtat |
28893467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 254 - 382
Target Start/End: Original strand, 55099197 - 55099325
Alignment:
| Q |
254 |
aaagaagaagaattcaagaaaatattaactgaaatattggggagtatcatgttgcagttggaaggaaatcctatagcagttgcttcaaattctgtagtgc |
353 |
Q |
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||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||| ||| || || ||| |||||||||| || | | |
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| T |
55099197 |
aaagaagaagaattcaagaaaattttaattgaaatactggggagtatcatgttgcagttagaaggaagtcccattgctgtttcttcaaattcagttttac |
55099296 |
T |
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| Q |
354 |
atgagcctctaggctcctcttctacactt |
382 |
Q |
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| T |
55099297 |
atgagcctttaagcgcatcttctacactt |
55099325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 55098716 - 55098768
Alignment:
| Q |
42 |
ggtggctccatctgctgctttacctccatttggtgcaattgaagaggtgtgtt |
94 |
Q |
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|||| |||||||||||| |||||||||| ||||||||||||||||||| |||| |
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| T |
55098716 |
ggtgtctccatctgctggtttacctccagttggtgcaattgaagaggtatgtt |
55098768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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