View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13860_low_1 (Length: 842)

Name: NF13860_low_1
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13860_low_1
NF13860_low_1
[»] chr7 (6 HSPs)
chr7 (10-824)||(27831431-27832243)
chr7 (194-823)||(27848711-27849340)
chr7 (407-591)||(6788707-6788891)
chr7 (621-679)||(8646286-8646344)
chr7 (407-520)||(8615910-8616023)
chr7 (626-679)||(3146678-3146731)
[»] chr1 (1 HSPs)
chr1 (407-526)||(15594233-15594352)
[»] chr4 (1 HSPs)
chr4 (407-499)||(30774447-30774539)
[»] chr2 (2 HSPs)
chr2 (480-582)||(12246207-12246309)
chr2 (537-582)||(7541548-7541593)
[»] chr8 (1 HSPs)
chr8 (626-679)||(43744230-43744283)


Alignment Details
Target: chr7 (Bit Score: 661; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 10 - 824
Target Start/End: Complemental strand, 27832243 - 27831431
Alignment:
Q  10 aagaatatcaaaatataaaccatatatataccattagaaaataaatctttatgtaaatgttttgcattcattgcatacaaaacagcaagacaacacagaa 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     ||||||||||||||||||||||||    
T  27832243 aagaaaatcaaaatataaaccatatatataccattagaaaataaatcttcatgtaaattttttgcattcat-----acaaaacagcaagacaacacagaa 27832149  T
Q  110 aatcttaatggagaaaatcttaaa---gtataatcttaatggnnnnnnnnnnnnnnnnnnnnnctaatcaatcttggcaatagtgttttcaaacatactt 206  Q
    |||||||||||||||| | |||||   |||||||||||||||                     |||||||||||||||||||||||||||||||||||||    
T  27832148 aatcttaatggagaaattgttaaaaaagtataatcttaatggaaaaagaaaaaagaaaaaaaactaatcaatcttggcaatagtgttttcaaacatactt 27832049  T
Q  207 tcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagcattgatcttcgttt 306  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27832048 tcgagctccttcaaatgatcctgaagaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgtaattgcagcattgatcttcgttt 27831949  T
Q  307 tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttcagttgagccattcg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831948 tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttcagttgagccattcg 27831849  T
Q  407 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831848 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 27831749  T
Q  507 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatggcgacgaggcgcag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831748 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatggcgacgaggcgcag 27831649  T
Q  607 gggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaaaggtttggttatc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831648 gggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaaaggtttggttatc 27831549  T
Q  707 ttcagttgtnnnnnnnncttgtgtcttcttgacaggtatagtggtatttctatgaatcactacagccatgtgatcatgtataagcctccaacctaaagac 806  Q
    |||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831548 ttcagttgtaaaaaaaacttttgtcttcttgacaggtatagtggtatttctatgaatcactacagccatgtgatcatgtataagcctccaacctaaagac 27831449  T
Q  807 agtggattaacatcgatc 824  Q
    |||||| |||||||||||    
T  27831448 agtggagtaacatcgatc 27831431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 194 - 823
Target Start/End: Complemental strand, 27849340 - 27848711
Alignment:
Q  194 ttcaaacatactttcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagca 293  Q
    ||||||||||||||| || |||| ||||||||||| | |||| |||| ||||||  ||| |||||| ||||||| |||||| || |||  ||||||| ||    
T  27849340 ttcaaacatactttcaagatcctccaaatgatcctcaagaacatctacttcatgaaggtcattctcatcaagcaaattttttgccattctaattgcaaca 27849241  T
Q  294 ttgatcttcgttttctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttca 393  Q
    || |||||| | |||||| |||||||||| ||||| | |  |||||||||||| ||||||||||| ||||| ||||  |||  ||| |||||||||||||    
T  27849240 ttcatcttcctgttctcttgtgtggagagcttcaagttagcattctgcttctttaaagcagtttcgattttataaatgcagctatccaatgcatttttca 27849141  T
Q  394 gttgagccattcgtaggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaatt 493  Q
    ||||||||||| |||||||||||||||||||| ||||||  || |||||||||| |||||  || |||||||||||||||||||| ||||||||||||||    
T  27849140 gttgagccatttgtaggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaatt 27849041  T
Q  494 ggttattattatcttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatgg 593  Q
     || ||||| |||| ||||||| |||| ||||| |||||  ||||||  ||||||||  | || ||| |||| || | ||||||||||| ||||||||||    
T  27849040 agtaattataatctcatttgtactgccagtggatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatgg 27848941  T
Q  594 cgacgaggcgcaggggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaa 693  Q
    |  ||| | ||||| |  || |||| |||| ||||||| |||||  |||||||||| |||||  |||||||||||||||||||||| ||||| ||| ||     
T  27848940 ccgcgaagggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcag 27848841  T
Q  694 aggtttggttatcttcagttgtnnnnnnnncttgtgtcttcttgacaggtatagtggtatttctatgaatcactacagccatgtgatcatgtataagcct 793  Q
    ||| ||||||||||||| ||||        ||| |||| |||||||||||||||| ||||| ||| |||| |||||| |||| |||| |||    |||||    
T  27848840 aggattggttatcttcacttgtataaaaaacttttgtcgtcttgacaggtatagtagtattcctaggaataactacacccatttgattatgctctagcct 27848741  T
Q  794 ccaacctaaagacagtggattaacatcgat 823  Q
    ||||||||||||||||||| ||||||||||    
T  27848740 ccaacctaaagacagtggagtaacatcgat 27848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 591
Target Start/End: Original strand, 6788707 - 6788891
Alignment:
Q  407 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 506  Q
    ||||||||||| ||||||| |  ||||||| |||||||||| ||||| ||| |||||||| ||  |  | |  ||||||||||||||||||||  | |||    
T  6788707 taggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatc 6788806  T
Q  507 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggat 591  Q
    | |||  ||||||| |||||   ||| || ||||| || |||||||| ||||||||||| |||| |||| |||||| ||||||||    
T  6788807 tcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatagaaaaatatacatcaaaaggat 6788891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 8646286 - 8646344
Alignment:
Q  621 agattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 679  Q
    ||||||||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  8646286 agattaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 8646344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 8615910 - 8616023
Alignment:
Q  407 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 506  Q
    ||||||||| ||||||||||| ||||| |  || ||||||| ||||| ||| |||||||| || |  ||||  |||||||||| |||||||||  ||||     
T  8615910 taggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatt 8616009  T
Q  507 ttatttgtattgcc 520  Q
    | ||||||||||||    
T  8616010 tcatttgtattgcc 8616023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 3146678 - 3146731
Alignment:
Q  626 aaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 679  Q
    |||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  3146678 aaaagaaccaagcagattgttgtcactagctcttgctctctcaccctcataaac 3146731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 407 - 526
Target Start/End: Original strand, 15594233 - 15594352
Alignment:
Q  407 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 506  Q
    |||||||||||||||||||||||| || |  || ||||||| ||||||||| |||||||| | || ||| |  |||||||||| |||||||||| | |||    
T  15594233 taggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatc 15594332  T
Q  507 ttatttgtattgccggtgga 526  Q
    |  ||||||||||| |||||    
T  15594333 tcgtttgtattgccagtgga 15594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 407 - 499
Target Start/End: Original strand, 30774447 - 30774539
Alignment:
Q  407 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttat 499  Q
    ||||||||||||||||||||||||||| |    |||||||| ||||||||| |||||||||||| | ||||  ||||||||||  ||||||||    
T  30774447 taggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttat 30774539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 480 - 582
Target Start/End: Complemental strand, 12246309 - 12246207
Alignment:
Q  480 ctttctttgtaattggttattattatcttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacata 579  Q
    |||||||||||||| |||||| | |||| ||||| |||||| |  |||   |  || ||||| ||||||||||| ||||||||| | |||||||||||||    
T  12246309 ctttctttgtaattagttattgtaatctcatttgaattgccagaagaactattcgtagcagaaactgtcaaaataccattttcaccaatagcaaaacata 12246210  T
Q  580 cat 582  Q
    |||    
T  12246209 cat 12246207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 7541548 - 7541593
Alignment:
Q  537 gcagagactgtcaaaatgccattttcatcgatagcaaaacatacat 582  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||||    
T  7541548 gcagaaactgtcaaaataccattttcatcaatagcaaaacaaacat 7541593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 679
Target Start/End: Original strand, 43744230 - 43744283
Alignment:
Q  626 aaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 679  Q
    |||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  43744230 aaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 43744283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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