View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_13 (Length: 457)
Name: NF13860_low_13
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 30576641 - 30576216
Alignment:
| Q |
13 |
aatatagcataaggaggtgtttgttaggactaaaggtaagaagtaagtaacattatagtataaggaggagttacttaattgattaattattgagttgcgt |
112 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30576641 |
aatatagaataaggaggtgtttgttaggattaaaggtaagaagtaagtaacattatagtataaggaggagttacttaattgattagttattgagttgcgt |
30576542 |
T |
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| Q |
113 |
gtataaataggagaatggaaggatagggaggaattgagatttgttaatattctgtgaatagatcagtggctctgttgtcgatagggaaacccttggaaga |
212 |
Q |
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| T |
30576541 |
gtataaataggagaatggaagtatagggaggaattgagatttgttaatattctgtgaatagatcagtggttctgttgtcgatagggaaacccttggaaga |
30576442 |
T |
|
| Q |
213 |
gagttctctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaacaaggtcacacaacaatattgttcacacttcaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30576441 |
gagttctctttcctattttcttaacagaaatgttctttttattcaattcaatatcttcgttcctaacaaggtcacacaacaatattgttcacacttcaca |
30576342 |
T |
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| Q |
313 |
cattcttgattctggttcttgccaattacaaagtttggtgaattgttattttcattactatagcttcaatgtaatagtcctcctcatccctcttgtatat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30576341 |
cattcttgattctggttcttgccaattacaaagtttgctgaattgttattttcattactatagcttcaatgtaatagtcctcctcatccatcttgtatat |
30576242 |
T |
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| Q |
413 |
aaatttaatgtaatgctgatccatta |
438 |
Q |
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| T |
30576241 |
aaatttaatgtaatgctgatccatta |
30576216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 38760503 - 38760569
Alignment:
| Q |
72 |
ataaggaggagttacttaattgattaattattgagttgcgtgtataaataggagaatggaaggatag |
138 |
Q |
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| T |
38760503 |
ataaagaggagttagttaattgattagttatagagtagcatgtataaataggagaatagaaggatag |
38760569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 21524226 - 21524287
Alignment:
| Q |
219 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
280 |
Q |
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| T |
21524226 |
tctttcctattttcttaataaatgtgttctttctattgaatacaaattcttggttcctaaca |
21524287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 21534786 - 21534847
Alignment:
| Q |
219 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
280 |
Q |
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|||||||||||||||||| | | |||||||| |||| ||| ||| |||||||||||||||| |
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| T |
21534786 |
tctttcctattttcttaataaatgtgttctttctattgaatacaaattcttggttcctaaca |
21534847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 20642106 - 20642045
Alignment:
| Q |
219 |
tctttcctattttcttaacagaaatgttctttttattcaattcaatttcttggttcctaaca |
280 |
Q |
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|||||||||||||||||| | || | |||||| |||| ||| ||| |||||||||||||||| |
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| T |
20642106 |
tctttcctattttcttaataaaagttttctttctattgaatacaaattcttggttcctaaca |
20642045 |
T |
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