View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_14 (Length: 455)
Name: NF13860_low_14
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 6093383 - 6093813
Alignment:
| Q |
13 |
aatattccaacttattcatcccttgaacatcttcgacggtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093383 |
aatattccaacttattcatcccttgaacatcttcaacagtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
6093482 |
T |
|
| Q |
113 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6093483 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
6093582 |
T |
|
| Q |
213 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6093583 |
aatgtaatgaccaatcttgacaatgcttgtagctctcccaacgggggaattttttttagtgtattacatcctgttagtaacaaagaaataagagacctca |
6093682 |
T |
|
| Q |
313 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093683 |
acttagtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatg |
6093782 |
T |
|
| Q |
413 |
tctaatagacgattcatttatgatcatagtg |
443 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
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|
| T |
6093783 |
tctaattgacgattcatttatgatcatagtg |
6093813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 138 - 418
Target Start/End: Original strand, 6246509 - 6246789
Alignment:
| Q |
138 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
237 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||| | || |||||||||||||||||||| |
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|
| T |
6246509 |
ttgttgctagatagatcaagccatttcaaattgattagtttttccaatccttgtggtgcttcctcaatggaagtttttgaaatgaccaatcttgacaatg |
6246608 |
T |
|
| Q |
238 |
cttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaaga |
337 |
Q |
| |
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||||||| ||||||||||| |||| | || || ||| | | | || || |||| ||||||||||||||| | | ||| ||| |||||||| || |
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| T |
6246609 |
cttgtagttctcccaatggtggaacatgtttcaatgaataacaacttttgagcactaaagtaataagagacctcaattcactcacagagtttggcaatga |
6246708 |
T |
|
| Q |
338 |
ttcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaat |
418 |
Q |
| |
|
||| || || ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||| |
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|
| T |
6246709 |
ttctagccttttattataggatatatctagtattgataaactattcatatatttgaaaaaactctcaggaacatgactaat |
6246789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 138 - 422
Target Start/End: Original strand, 6179676 - 6179960
Alignment:
| Q |
138 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
237 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||| | ||||| ||||| |||||||||||||| |
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|
| T |
6179676 |
ttgttgctagatagatcaagccatttcaaattggttagtttttccaagccttgtggtgcttcctcaatggaagtaaatgaaatgatcaatcttgacaatg |
6179775 |
T |
|
| Q |
238 |
cttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaaga |
337 |
Q |
| |
|
||||||| |||||||||||||| | | | ||| ||||| ||||| |||||||||||||||||||| | | | | ||| |||||||| || |
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|
| T |
6179776 |
cttgtagttctcccaatgggggcacatgtttcaatctatcacatctaaagagtactaaagaaataagagacctcaattcactgacagagtttggcaatga |
6179875 |
T |
|
| Q |
338 |
ttcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaatagac |
422 |
Q |
| |
|
||| || || |||| |||||||||| |||||||||| | |||||||||| |||||||||| |||||||| || |||||||||| |
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|
| T |
6179876 |
ttctagcctttcattataggatagatccagtattgataaaatattcatatatttgaaaaaacactctggaatatatctaatagac |
6179960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 147 - 432
Target Start/End: Original strand, 6105291 - 6105576
Alignment:
| Q |
147 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
246 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||| ||| |||||| || |||||||| | | | |||||||||||||||||||||||||| | |
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|
| T |
6105291 |
gatagatcaagccatttcaaattggttagtttttccaagcctagtggtaatttctcaatggaagtcaccgaaatgaccaatcttgacaatgcttgtaatt |
6105390 |
T |
|
| Q |
247 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattcaagttt |
346 |
Q |
| |
|
||||||||||||| | |||| | ||||| | | || || ||||||| |||||||||||||||||| || || | |||||||||||| || | |
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|
| T |
6105391 |
ctcccaatgggggcacatgtatcagtgaagcacatcttttgagaactaaagaaacaagagacctcaacttagtgatggagtctggcaaagattctaggtc |
6105490 |
T |
|
| Q |
347 |
tctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaatagacgattcattta |
432 |
Q |
| |
|
| |||| | |||| ||| |||||||||| | ||||||||||| | |||||||||||||||||| | ||||| ||| ||||||||| |
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|
| T |
6105491 |
ttcattatatgataaatccagtattgatagattattcatatacataaaaaaactctctggaacacgactaatggacaattcattta |
6105576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 147 - 435
Target Start/End: Original strand, 6088141 - 6088426
Alignment:
| Q |
147 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgtagct |
246 |
Q |
| |
|
|||||||||||||||||||| | ||| || ||||| ||||||||| |||| | ||||| ||| || |||||||||||||||||||| ||| | |
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|
| T |
6088141 |
gatagatcaagccatttcaaatg---tagtttatccaagccttgtggtgcttctttaatggaacagtctgaaatgaccaatcttgacaatgaccatagtt |
6088237 |
T |
|
| Q |
247 |
ctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaacttagtcatagaatttggcaaagattcaagttt |
346 |
Q |
| |
|
|||||| |||||| | |||| || ||||||||||||||| ||||||| |||||| |||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
6088238 |
ctcccactgggggcacatgtgtaagtgaatgacatcctgttagtactaaagaaacaagagatatcaacttagtgatagagttaggcaaagattctagttt |
6088337 |
T |
|
| Q |
347 |
tctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaatagacgattcatttatga |
435 |
Q |
| |
|
| ||||| ||||||||| ||||||| || | ||| || || | ||||||||||||||||||||| ||||||||| ||| |||||||| |
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|
| T |
6088338 |
tttattattggatagatcgagtattgttagattatctatgtattcgaaaaaactctctggaacatgactaatagacaatttatttatga |
6088426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 218 - 432
Target Start/End: Original strand, 6207306 - 6207520
Alignment:
| Q |
218 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
317 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
6207306 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6207405 |
T |
|
| Q |
318 |
gtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaa |
417 |
Q |
| |
|
|| || || | |||||||||||| || | | |||| | |||| ||| |||||||||| | ||||||||||| | |||||||||||||||||| | |||| |
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|
| T |
6207406 |
gtgatggagtctggcaaagattctaggtcttcattatatgataaatccagtattgatagattattcatatacataaaaaaactctctggaacacgactaa |
6207505 |
T |
|
| Q |
418 |
tagacgattcattta |
432 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
6207506 |
tggacaattcattta |
6207520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 218 - 432
Target Start/End: Original strand, 6233724 - 6233938
Alignment:
| Q |
218 |
aatgaccaatcttgacaatgcttgtagctctcccaatgggggaannnnnnnnagtgtattacatcctgttagtaccaaagaaataagagacctcaactta |
317 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| | |||| || ||||||| |||||| ||||||| |||||||||||||||| |
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|
| T |
6233724 |
aatgaccaatcttgacaatctctgtaattctcccaatgggggcacatgtttcagtgaatcacatccttttagtattaaagaaacaagagacctcaactta |
6233823 |
T |
|
| Q |
318 |
gtcatagaatttggcaaagattcaagttttctattacaggatagatctagtattgatacactattcatatacttgaaaaaactctctggaacatgtctaa |
417 |
Q |
| |
|
|| || || | |||||||||||| || | | |||| | |||| ||| |||||||||| | ||||||||||| | |||||||||||||||||| | |||| |
|
|
| T |
6233824 |
gtgatggagtctggcaaagattctaggtcttcattatatgataaatccagtattgatagattattcatatacataaaaaaactctctggaacacgactaa |
6233923 |
T |
|
| Q |
418 |
tagacgattcattta |
432 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
6233924 |
tggacaattcattta |
6233938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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