View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_16 (Length: 439)
Name: NF13860_low_16
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 7047426 - 7047010
Alignment:
| Q |
18 |
aggggtaaccccttttcttcttttcttgtattacattgtatatgtaaatatgtatttttcctttacttagatttttgaaggctaagacttattaccaaat |
117 |
Q |
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| T |
7047426 |
aggggtaaccccttttcttcttttcttgtattacattgtatatgtaaatatgtatttttcctttacttagattttttaaggctaagactgattaccaaat |
7047327 |
T |
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| Q |
118 |
tcattgttatctaaaattgcagtctttgatgattgcatccattcccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcatttt |
217 |
Q |
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| T |
7047326 |
tcattgttatctaaaattgcagtctttgatgattgcatccattcccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcatttt |
7047227 |
T |
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| Q |
218 |
gatttttgctcaatttccttaagttcttattttcccgagtttggtattcataacatgttttgcatttgtacacagagatgtcaactcaatggtaagtgtt |
317 |
Q |
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| T |
7047226 |
gattttttctcaatttccttaagttcttattttcctgagtttggtattcataacatgttttgcatttgtacacggagatgtcaactcagtagtaagtgtt |
7047127 |
T |
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| Q |
318 |
tgaccttatagcctcaagggaccgagttcaaatccctacggtgataaaacgactattagtgttacttcaattaataacataacaatatttgcatctttca |
417 |
Q |
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| T |
7047126 |
tgaccttataacctcaagggaccgagttcaaatccctatggtgataaaacgactattagtgttacttcaattaataacataacaatatttgcatctttca |
7047027 |
T |
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| Q |
418 |
ggattcttcttctctct |
434 |
Q |
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| T |
7047026 |
ggattcttcttttctct |
7047010 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 41337654 - 41337709
Alignment:
| Q |
296 |
tgtcaactcaatggtaagtgtttgaccttatagcctcaagggaccgagttcaaatcc |
352 |
Q |
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| T |
41337654 |
tgtcagctcagtggtaagagtttgaccttataacctcaaggg-cggagttcaaatcc |
41337709 |
T |
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