View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13860_low_17 (Length: 405)
Name: NF13860_low_17
Description: NF13860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13860_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 40773282 - 40773625
Alignment:
| Q |
9 |
acatcatcagtaatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaatattgtagaagtgaaaaatacaaattaagtgtgcatg |
108 |
Q |
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| T |
40773282 |
acatcatcagtaatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaat---gtagaagtgaaaaatacaaattaagtgtgcatg |
40773378 |
T |
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| Q |
109 |
attagttaatgatccccacaaaggaggaattcccctgacgagtaacgatctttatagtaacatcttcaaggggattgattttgctatccaaaaaggataa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
40773379 |
attagttaatgatccccacaaaggaggaattcccctaacgagtaacgatctttatagtaacatcttcaaggggattggttttgctatctaaaaaggataa |
40773478 |
T |
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| Q |
209 |
gtggtgcaacttattttccgtttgccctacattcctgcgtaattttccagtttatagcctaactagcccaaatattcgactagcgagagtgtaattataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40773479 |
gtggtgcaacttattttccgtttgccctacattcctgcgtaattttccagtttatagcctaactagcccaaatattcgactagcgagagtgtaattataa |
40773578 |
T |
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| Q |
309 |
ttcaataatagctatagagtagagcttaattaattcaacaaacaaaa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40773579 |
ttcaataatagctatagagtagagcttaattaattcaacaaacaaaa |
40773625 |
T |
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